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The map label for this gene is nodD [H]

Identifier: 119896970

GI number: 119896970

Start: 715560

End: 716513

Strand: Direct

Name: nodD [H]

Synonym: azo0679

Alternate gene names: 119896970

Gene position: 715560-716513 (Clockwise)

Preceding gene: 119896969

Following gene: 119896972

Centisome position: 16.35

GC content: 69.71

Gene sequence:

>954_bases
ATGGCCAACGGATGCACCTGGGATTCGCTCGACGCGCACCTGCTGCGCGTGCTGCACGTACTGCTCACCGAAGGCAGCGT
GTCGCGCGCCGCGCGCCGGCTCAACCAGTCGCAGCCCGCGGTCAGCACCGCGCTCAAGCGCCTGCGCGACATCACCGGCG
ACAAGCTGCTGGTGCGCTCGCGGACCGGCATGACGCCCACCGAACGCGGCGCCGAACTGCTCGAACCGGTGCGCATCGCG
CTCGAACAGATGGAACGCATCGCCGCCGGACCCGAAGGCTTCGAACCGGCCAACTCGCGCCGCGTCTTCAACATCGCCAC
GCCCGATTACCTCAATGCGCTGATGCTGGGCGACATCGTCGCCGACATCCATCGCCAGGCACCGGGCGCGCAGGTCGCGT
TTCACTCGATGACGCAGACCTTCGACTACCCGCGTGCGCTCGAATCGGGCGAACTCGACCTCGTCATCGGCAACTGGCCC
AACCCGCCGGAACACCTGCGCACCGCGCCGCTGTTCGAGGACCGCATGGTGGTGATGATGCGCACCGGCCACCCGCTGGC
GGGCGCGCCGCTCACCCTGTCGGCCTGGCTGGCGGCCGAGCACGTGGTGCCCACCTCCTACTCGGTCGGCCAACGCGGGG
TGGTGGACGTCTACCTCGCGCGCGAGCGCCTGCGCCGCAACGTCGTCGCCCATGTGCCGTATTTCCACATGGCGCCGTAC
ATGGTGCTGCAGTCGGATCTGGTGTTTACCGCACCGGCGCGCTTCGCCTCGCACTACGCCGATTTCCTGCCGATGGCGGT
GGTGGATGCGCCGGCCGAGCTGCCGCGCATGGCCTACTACCTGCTGTGGCACGACCGCAGCCAGCACTCTGCCGAATGCC
GCTGGCTGCGCGAACGCATCATCCGCGCCGCACGGCCCGATCCGGCACCGGCGCCGCTGCGGCGCGTGGCCTGA

Upstream 100 bases:

>100_bases
AATCGTCATGCGCGGCGAGGGCGCCAACATGGATGCCGACGGCGTGCGCGAAGCGCTCGCGGTCTGAACCCGCCACCGCA
CCCCCACAGGAGAACCCTCG

Downstream 100 bases:

>100_bases
AGCGGCGGCGCGTTCAGCGCCCCTTGAACACCGGCTTGCGCTTGGCGAGGAAGGCTTCCAGTCCCTCGCGGTAGTCCTCG
GTGGCGAGGAAGTCGAAGGC

Product: nodulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MANGCTWDSLDAHLLRVLHVLLTEGSVSRAARRLNQSQPAVSTALKRLRDITGDKLLVRSRTGMTPTERGAELLEPVRIA
LEQMERIAAGPEGFEPANSRRVFNIATPDYLNALMLGDIVADIHRQAPGAQVAFHSMTQTFDYPRALESGELDLVIGNWP
NPPEHLRTAPLFEDRMVVMMRTGHPLAGAPLTLSAWLAAEHVVPTSYSVGQRGVVDVYLARERLRRNVVAHVPYFHMAPY
MVLQSDLVFTAPARFASHYADFLPMAVVDAPAELPRMAYYLLWHDRSQHSAECRWLRERIIRAARPDPAPAPLRRVA

Sequences:

>Translated_317_residues
MANGCTWDSLDAHLLRVLHVLLTEGSVSRAARRLNQSQPAVSTALKRLRDITGDKLLVRSRTGMTPTERGAELLEPVRIA
LEQMERIAAGPEGFEPANSRRVFNIATPDYLNALMLGDIVADIHRQAPGAQVAFHSMTQTFDYPRALESGELDLVIGNWP
NPPEHLRTAPLFEDRMVVMMRTGHPLAGAPLTLSAWLAAEHVVPTSYSVGQRGVVDVYLARERLRRNVVAHVPYFHMAPY
MVLQSDLVFTAPARFASHYADFLPMAVVDAPAELPRMAYYLLWHDRSQHSAECRWLRERIIRAARPDPAPAPLRRVA
>Mature_316_residues
ANGCTWDSLDAHLLRVLHVLLTEGSVSRAARRLNQSQPAVSTALKRLRDITGDKLLVRSRTGMTPTERGAELLEPVRIAL
EQMERIAAGPEGFEPANSRRVFNIATPDYLNALMLGDIVADIHRQAPGAQVAFHSMTQTFDYPRALESGELDLVIGNWPN
PPEHLRTAPLFEDRMVVMMRTGHPLAGAPLTLSAWLAAEHVVPTSYSVGQRGVVDVYLARERLRRNVVAHVPYFHMAPYM
VLQSDLVFTAPARFASHYADFLPMAVVDAPAELPRMAYYLLWHDRSQHSAECRWLRERIIRAARPDPAPAPLRRVA

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=306, Percent_Identity=29.0849673202614, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790147, Length=298, Percent_Identity=25.503355704698, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=282, Percent_Identity=23.0496453900709, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790262, Length=204, Percent_Identity=29.9019607843137, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=276, Percent_Identity=23.1884057971014, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35459; Mature: 35328

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGCTWDSLDAHLLRVLHVLLTEGSVSRAARRLNQSQPAVSTALKRLRDITGDKLLVRS
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEC
RTGMTPTERGAELLEPVRIALEQMERIAAGPEGFEPANSRRVFNIATPDYLNALMLGDIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
ADIHRQAPGAQVAFHSMTQTFDYPRALESGELDLVIGNWPNPPEHLRTAPLFEDRMVVMM
HHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCEEEEE
RTGHPLAGAPLTLSAWLAAEHVVPTSYSVGQRGVVDVYLARERLRRNVVAHVPYFHMAPY
ECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
MVLQSDLVFTAPARFASHYADFLPMAVVDAPAELPRMAYYLLWHDRSQHSAECRWLRERI
HHHHCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEECCCCCHHHHHHHHHHH
IRAARPDPAPAPLRRVA
HHHCCCCCCCCCHHHCC
>Mature Secondary Structure 
ANGCTWDSLDAHLLRVLHVLLTEGSVSRAARRLNQSQPAVSTALKRLRDITGDKLLVRS
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEC
RTGMTPTERGAELLEPVRIALEQMERIAAGPEGFEPANSRRVFNIATPDYLNALMLGDIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
ADIHRQAPGAQVAFHSMTQTFDYPRALESGELDLVIGNWPNPPEHLRTAPLFEDRMVVMM
HHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCEEEEE
RTGHPLAGAPLTLSAWLAAEHVVPTSYSVGQRGVVDVYLARERLRRNVVAHVPYFHMAPY
ECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
MVLQSDLVFTAPARFASHYADFLPMAVVDAPAELPRMAYYLLWHDRSQHSAECRWLRERI
HHHHCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEECCCCCHHHHHHHHHHH
IRAARPDPAPAPLRRVA
HHHCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]