BacMap

Definition	Azoarcus sp. BH72 chromosome, complete genome.
Accession	NC_008702
Length	4,376,040

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The map label for this gene is urtD [H]

Identifier: 119896968

GI number: 119896968

Start: 713550

End: 714407

Strand: Direct

Name: urtD [H]

Synonym: azo0677

Alternate gene names: 119896968

Gene position: 713550-714407 (Clockwise)

Preceding gene: 119896967

Following gene: 119896969

Centisome position: 16.31

GC content: 66.32

Gene sequence:

>858_bases
ATGACCGAAACCACCGAACTGGAACGCCGCGCGCGCGCCTTCGCCGAAGCGGGCGGGCGCGAGAACTGGGAGGGCGCCGC
CGCCACCGGCCACGTCGCCACCGGCGAACTGGACCTCTCGCACAACGTCATCCTGTATCTGGACGACATCACGGTGAGCT
TCGACGGCTTCCGCGCGCTCAACAAGCTGTCGCTCACGATCGACGCCGGCGAGCTGCGCTGCATCATCGGCCCCAACGGC
GCCGGCAAGACCACGATGATGGACGTCATCACCGGCAAGACGCGGCCCGACGAGGGCAAGGCCTTCTTCGGCCAGACGCT
GGACCTGACCCGTATGACCGAGCCGGAGATCGCCCACGCCGGCATCGGCCGCAAGTTCCAGAAGCCGACCATCTTCGAGA
ACCACAGCGCGTTCGAGAACCTGGAACTGGCGATGAAGGCCGACAAGCGGGTGCGCCGCACGCTGTTCGCCAGCCTGTTC
GACGACGAGCGCGACCGCATCGCCGACGTGCTCAAGCAGATCCGCCTCGACAAGTTCGCCGACCGCAGCGCCGGGCTGCT
GTCGCACGGTCAGAAGCAGTGGCTGGAGATCGGCATGCTGCTGATGCAGGAGCCCAAGCTGCTGCTGCTCGACGAGCCGG
TGGCCGGCATGACCGACGACGAGACCGAGCGCACCGCCGAACTGTTCGTGAGCCTCGCCGGCAAGCATTCACTGATGGTG
GTGGAGCACGACATGGCCTTCGTCGAGGCGCTCGGCGGCAAGGTCACCGTGCTGTGCGAAGGATCGGTGCTGGCTGAAGG
TGATCTCGCCACGGTGCAGGCGGATTCGCGGGTTATCGAGGTTTATCTGGGGCGTTGA

Upstream 100 bases:

>100_bases
CCCGCAAGGGCCCCGACAGCGCGGCAGCGGCGCCGGCCGCGACCGCAGCGCCCGTGGGTGAAGCCGCGCCCGAAACCACC
GTCGCCAAGGGAGCCACGGC

Downstream 100 bases:

>100_bases
TTGGTTGTTCGTGCCGCTCGGCGGTTATTGCATTGAACCGCCGGCTGCGCGGGGTATTCCTTCCAGGGGCTGCGGAACTC
GCTCACTACGTTCGCTCGGC

Product: ABC transporter ATP-binding protein

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTETTELERRARAFAEAGGRENWEGAAATGHVATGELDLSHNVILYLDDITVSFDGFRALNKLSLTIDAGELRCIIGPNG
AGKTTMMDVITGKTRPDEGKAFFGQTLDLTRMTEPEIAHAGIGRKFQKPTIFENHSAFENLELAMKADKRVRRTLFASLF
DDERDRIADVLKQIRLDKFADRSAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETERTAELFVSLAGKHSLMV
VEHDMAFVEALGGKVTVLCEGSVLAEGDLATVQADSRVIEVYLGR

Sequences:

>Translated_285_residues
MTETTELERRARAFAEAGGRENWEGAAATGHVATGELDLSHNVILYLDDITVSFDGFRALNKLSLTIDAGELRCIIGPNG
AGKTTMMDVITGKTRPDEGKAFFGQTLDLTRMTEPEIAHAGIGRKFQKPTIFENHSAFENLELAMKADKRVRRTLFASLF
DDERDRIADVLKQIRLDKFADRSAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETERTAELFVSLAGKHSLMV
VEHDMAFVEALGGKVTVLCEGSVLAEGDLATVQADSRVIEVYLGR
>Mature_284_residues
TETTELERRARAFAEAGGRENWEGAAATGHVATGELDLSHNVILYLDDITVSFDGFRALNKLSLTIDAGELRCIIGPNGA
GKTTMMDVITGKTRPDEGKAFFGQTLDLTRMTEPEIAHAGIGRKFQKPTIFENHSAFENLELAMKADKRVRRTLFASLFD
DERDRIADVLKQIRLDKFADRSAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETERTAELFVSLAGKHSLMVV
EHDMAFVEALGGKVTVLCEGSVLAEGDLATVQADSRVIEVYLGR

Specific function: Probable component of a branched-chain amino-acid transport system [H]

COG id: COG4674

COG function: function code R; Uncharacterized ABC-type transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI150417984, Length=223, Percent_Identity=31.390134529148, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI47078218, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45446740, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI11967969, Length=268, Percent_Identity=25.3731343283582, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI11967971, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI105990541, Length=235, Percent_Identity=28.0851063829787, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31657092, Length=249, Percent_Identity=24.8995983935743, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27436953, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI153792144, Length=159, Percent_Identity=30.8176100628931, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI27262624, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27262626, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI21536376, Length=227, Percent_Identity=26.8722466960352, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1789864, Length=252, Percent_Identity=31.3492063492063, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1790190, Length=245, Percent_Identity=30.6122448979592, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790525, Length=236, Percent_Identity=27.1186440677966, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788897, Length=243, Percent_Identity=27.5720164609054, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=28.5067873303167, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=26.5822784810127, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=27.7310924369748, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081791, Length=227, Percent_Identity=25.5506607929515, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081709, Length=242, Percent_Identity=26.4462809917355, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=26.9911504424779, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081782, Length=235, Percent_Identity=30.6382978723404, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=28.2258064516129, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=28.3842794759825, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789991, Length=248, Percent_Identity=27.0161290322581, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790544, Length=234, Percent_Identity=24.7863247863248, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=25.764192139738, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=26.9058295964126, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=231, Percent_Identity=22.0779220779221, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=24.3362831858407, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=227, Percent_Identity=25.1101321585903, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788472, Length=252, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790162, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=25.1121076233184, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=30.3482587064677, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786872, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789963, Length=249, Percent_Identity=28.9156626506024, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788210, Length=241, Percent_Identity=25.7261410788382, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=231, Percent_Identity=24.2424242424242, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=22.7272727272727, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081834, Length=198, Percent_Identity=25.7575757575758, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=228, Percent_Identity=26.7543859649123, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787164, Length=232, Percent_Identity=25.4310344827586, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787972, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=223, Percent_Identity=24.6636771300448, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789586, Length=234, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=250, Percent_Identity=23.6, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786319, Length=176, Percent_Identity=32.9545454545455, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=26.457399103139, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788506, Length=223, Percent_Identity=28.2511210762332, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789032, Length=210, Percent_Identity=24.7619047619048, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786698, Length=189, Percent_Identity=25.9259259259259, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=25.1121076233184, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71983510, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71983516, Length=232, Percent_Identity=28.8793103448276, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=206, Percent_Identity=29.126213592233, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17510237, Length=241, Percent_Identity=26.9709543568465, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=237, Percent_Identity=25.3164556962025, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17533971, Length=246, Percent_Identity=25.609756097561, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28574150, Length=207, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007328, Length=207, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=26.3414634146341, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31381; Mature: 31250

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETTELERRARAFAEAGGRENWEGAAATGHVATGELDLSHNVILYLDDITVSFDGFRAL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECEEECCCCEEEEEECEEEECCHHHCE
NKLSLTIDAGELRCIIGPNGAGKTTMMDVITGKTRPDEGKAFFGQTLDLTRMTEPEIAHA
EEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEECCCCEEEEECCCCCHHHC
GIGRKFQKPTIFENHSAFENLELAMKADKRVRRTLFASLFDDERDRIADVLKQIRLDKFA
CCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
DRSAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETERTAELFVSLAGKHSLMV
CCCCHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEE
VEHDMAFVEALGGKVTVLCEGSVLAEGDLATVQADSRVIEVYLGR
EECHHHHHHHCCCEEEEEECCCEEECCCEEEEECCCEEEEEEECC
>Mature Secondary Structure 
TETTELERRARAFAEAGGRENWEGAAATGHVATGELDLSHNVILYLDDITVSFDGFRAL
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECEEECCCCEEEEEECEEEECCHHHCE
NKLSLTIDAGELRCIIGPNGAGKTTMMDVITGKTRPDEGKAFFGQTLDLTRMTEPEIAHA
EEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEECCCCEEEEECCCCCHHHC
GIGRKFQKPTIFENHSAFENLELAMKADKRVRRTLFASLFDDERDRIADVLKQIRLDKFA
CCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
DRSAGLLSHGQKQWLEIGMLLMQEPKLLLLDEPVAGMTDDETERTAELFVSLAGKHSLMV
CCCCHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEE
VEHDMAFVEALGGKVTVLCEGSVLAEGDLATVQADSRVIEVYLGR
EECHHHHHHHCCCEEEEEECCCEEECCCEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]