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The map label for this gene is sodC [H]

Identifier: 119896813

GI number: 119896813

Start: 558326

End: 558853

Strand: Reverse

Name: sodC [H]

Synonym: azo0522

Alternate gene names: 119896813

Gene position: 558853-558326 (Counterclockwise)

Preceding gene: 119896822

Following gene: 119896812

Centisome position: 12.77

GC content: 71.97

Gene sequence:

>528_bases
ATGCCCTTCGCCAAGACTGTTGCCGCCCTCGCGCTTGCGGCCTGCGCCACCCACGCCCTCGCCGCCGACCGCGCCACCGC
CGAACTGATCGACCGCCAGGGCAAGGCGATCGGCACCGCCACGCTGACCGAAGGCCCGGCGGGCGTGCTCATCCATGTCT
CGGCCAAGGGGCTGGCGGCGGGTCCCAAGGGCATCCACATCCACAGCGTCGGCACCTGCGAGGACGCGGACAAGGGCTTC
GTCGCCTCCAAGGGCCACCTCAACCCCACCGGCAAGAAGCACGGCCTGCTGAACCCCGAAGGGCCGGATGCGGGCGACCT
GCCGGTGATCTTCGTCCACGCCGACGGCAGCGTCGAAGCCGAGCTGTACACCCCGCTTGCCAGCATCAAGGGCGCGGGCG
AGCGGGCGGCGCTGCTGGATGCCGACGGCGCCGCGCTGGTGATCCATGAAAGCCGCGACGACCACAGCACCCAGCCGATC
GGCGGCGCCGGCGCGCGCATCGCCTGCGGCGTGGTGAAGGGCGAGTGA

Upstream 100 bases:

>100_bases
ACCGCATGCACCGTCGGCATGAAGACATGACGTCAGACTGGCCGGACGGCGCGGCGCTGCGGCCCATCCAATTGCATACC
CACCCCTGCAGGAGACCCAG

Downstream 100 bases:

>100_bases
GCCCACGGCGGCGCCCCTGCCGCGCCGCCGCCGTGCTGCTGGCCGCGCTGCTGACGGGGCCGGCGACGGCGGCGCCGGGC
GCTGCGCTCGGCGCGCGCGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MPFAKTVAALALAACATHALAADRATAELIDRQGKAIGTATLTEGPAGVLIHVSAKGLAAGPKGIHIHSVGTCEDADKGF
VASKGHLNPTGKKHGLLNPEGPDAGDLPVIFVHADGSVEAELYTPLASIKGAGERAALLDADGAALVIHESRDDHSTQPI
GGAGARIACGVVKGE

Sequences:

>Translated_175_residues
MPFAKTVAALALAACATHALAADRATAELIDRQGKAIGTATLTEGPAGVLIHVSAKGLAAGPKGIHIHSVGTCEDADKGF
VASKGHLNPTGKKHGLLNPEGPDAGDLPVIFVHADGSVEAELYTPLASIKGAGERAALLDADGAALVIHESRDDHSTQPI
GGAGARIACGVVKGE
>Mature_174_residues
PFAKTVAALALAACATHALAADRATAELIDRQGKAIGTATLTEGPAGVLIHVSAKGLAAGPKGIHIHSVGTCEDADKGFV
ASKGHLNPTGKKHGLLNPEGPDAGDLPVIFVHADGSVEAELYTPLASIKGAGERAALLDADGAALVIHESRDDHSTQPIG
GAGARIACGVVKGE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=180, Percent_Identity=35, Blast_Score=77, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17554806, Length=179, Percent_Identity=30.7262569832402, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17458; Mature: 17327

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFAKTVAALALAACATHALAADRATAELIDRQGKAIGTATLTEGPAGVLIHVSAKGLAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCC
GPKGIHIHSVGTCEDADKGFVASKGHLNPTGKKHGLLNPEGPDAGDLPVIFVHADGSVEA
CCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
ELYTPLASIKGAGERAALLDADGAALVIHESRDDHSTQPIGGAGARIACGVVKGE
HEECCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
PFAKTVAALALAACATHALAADRATAELIDRQGKAIGTATLTEGPAGVLIHVSAKGLAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCC
GPKGIHIHSVGTCEDADKGFVASKGHLNPTGKKHGLLNPEGPDAGDLPVIFVHADGSVEA
CCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
ELYTPLASIKGAGERAALLDADGAALVIHESRDDHSTQPIGGAGARIACGVVKGE
HEECCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]