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The map label for this gene is nodB [H]

Identifier: 119896545

GI number: 119896545

Start: 282048

End: 282746

Strand: Reverse

Name: nodB [H]

Synonym: azo0254

Alternate gene names: 119896545

Gene position: 282746-282048 (Counterclockwise)

Preceding gene: 119896546

Following gene: 119896544

Centisome position: 6.46

GC content: 75.11

Gene sequence:

>699_bases
GTGCTCGCCGCGCTGGCGCTGAACCACGCCGCGCTGACCGCGGCCGGGCTGTGGCCGCGCAGCCGCCTGCTCGGCCCCAA
CTGGACGCGGCTGCCCGCCGCGGCGGCTGCACGCGGCGAAATCGCACTGACCATCGACGACGGCCCCGACCCCGAGGTAA
CGCCGCAGGTGCTCGCCCAGCTTGCGGCCGCCGGCGCCCGTGCCACCTTCTTCCTGATCGGCGAAAACGCCGCCCGCCAC
CCCCAGCTGGTGGCCGACATCCTGCGCGCCGGCCACGAGGTGCAGAACCACTCGCAATGGCACCGCAAGACCTTCTCGCT
GTTCGGCCCGCGCCGCATGGAACGCGACGTGGCCGCGGCGCAGCACACGCTTACCGGTCTGGGCGCACCGCTGCCGCGCT
TCTTCCGCGCCCCCGCCGGACTGCGCAACCCGTTCCTGGAGCCGGTGCTCGCGCGCCACGGCCTGACGCTGGCGAGCTGG
ACGCGCCGCGCCTTCGACACCCGCGAGGGCGAGCCGGCGGCGGTGCTCGCGCGCCTTACGCGCGGACTCGGCCCCGGCGA
CATCCTGCTGCTGCACGACGGCCATGCCGCGCGCAGCCCCGGCGGGCGCGCGGTGATCCTGGAAGTACTGCCGCGCCTGC
TCGATGCCGTCCGCACCGCCGGCCTGCACCCCGTGACCCTGACTGCTGCCCTTCGATGA

Upstream 100 bases:

>100_bases
CGCCCGCCGCTGGCGCCCCACCCCGCTGATCACCGCCACGCTGGCGCTCCACCTTGCCGCGCTCGGCGGGCTGGCGGCCG
CTCCGGCGTGGTGGGGATGG

Downstream 100 bases:

>100_bases
GTTCCGCCTTCCGCAAACGGCTGCTCGACGCCGCCACCGCCCCCTATCGCCCCGCCGGGCATTTCGCCTGGCATTTCGCC
CGCGGCAAGCTCGGTCGCGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLAALALNHAALTAAGLWPRSRLLGPNWTRLPAAAAARGEIALTIDDGPDPEVTPQVLAQLAAAGARATFFLIGENAARH
PQLVADILRAGHEVQNHSQWHRKTFSLFGPRRMERDVAAAQHTLTGLGAPLPRFFRAPAGLRNPFLEPVLARHGLTLASW
TRRAFDTREGEPAAVLARLTRGLGPGDILLLHDGHAARSPGGRAVILEVLPRLLDAVRTAGLHPVTLTAALR

Sequences:

>Translated_232_residues
MLAALALNHAALTAAGLWPRSRLLGPNWTRLPAAAAARGEIALTIDDGPDPEVTPQVLAQLAAAGARATFFLIGENAARH
PQLVADILRAGHEVQNHSQWHRKTFSLFGPRRMERDVAAAQHTLTGLGAPLPRFFRAPAGLRNPFLEPVLARHGLTLASW
TRRAFDTREGEPAAVLARLTRGLGPGDILLLHDGHAARSPGGRAVILEVLPRLLDAVRTAGLHPVTLTAALR
>Mature_232_residues
MLAALALNHAALTAAGLWPRSRLLGPNWTRLPAAAAARGEIALTIDDGPDPEVTPQVLAQLAAAGARATFFLIGENAARH
PQLVADILRAGHEVQNHSQWHRKTFSLFGPRRMERDVAAAQHTLTGLGAPLPRFFRAPAGLRNPFLEPVLARHGLTLASW
TRRAFDTREGEPAAVLARLTRGLGPGDILLLHDGHAARSPGGRAVILEVLPRLLDAVRTAGLHPVTLTAALR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 24814; Mature: 24814

Theoretical pI: Translated: 12.01; Mature: 12.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAALALNHAALTAAGLWPRSRLLGPNWTRLPAAAAARGEIALTIDDGPDPEVTPQVLAQ
CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCHHHHHH
LAAAGARATFFLIGENAARHPQLVADILRAGHEVQNHSQWHRKTFSLFGPRRMERDVAAA
HHHCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QHTLTGLGAPLPRFFRAPAGLRNPFLEPVLARHGLTLASWTRRAFDTREGEPAAVLARLT
HHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHH
RGLGPGDILLLHDGHAARSPGGRAVILEVLPRLLDAVRTAGLHPVTLTAALR
HCCCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MLAALALNHAALTAAGLWPRSRLLGPNWTRLPAAAAARGEIALTIDDGPDPEVTPQVLAQ
CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCHHHHHH
LAAAGARATFFLIGENAARHPQLVADILRAGHEVQNHSQWHRKTFSLFGPRRMERDVAAA
HHHCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QHTLTGLGAPLPRFFRAPAGLRNPFLEPVLARHGLTLASWTRRAFDTREGEPAAVLARLT
HHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHH
RGLGPGDILLLHDGHAARSPGGRAVILEVLPRLLDAVRTAGLHPVTLTAALR
HCCCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]