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The map label for this gene is atpD [H]

Identifier: 119896451

GI number: 119896451

Start: 176757

End: 178157

Strand: Direct

Name: atpD [H]

Synonym: azo0159

Alternate gene names: 119896451

Gene position: 176757-178157 (Clockwise)

Preceding gene: 119896450

Following gene: 119896452

Centisome position: 4.04

GC content: 63.1

Gene sequence:

>1401_bases
ATGAGTAACGGTACTATCGTTCAGTGCATCGGCGCGGTGGTGGACATCCAGTTCCCGCGCGATTCGATGCCCAAGGTGTA
TGACGCCCTGAAGCTTGAGGACGCCGCCGACTCCTTCGCCGAAGCTGGCCTGACCTTCGAGGTCCAGCAGCAACTCGGCG
ACGGCGTGGTGCGTACGATTGCGCTGGGTTCCTCCGACGGCCTGCGCCGCGGCATGAAGGTGTCCAACACCGGCAAGCCG
ATCTCGGTGCCTGTCGGCCACGGCACGCTGGGCCGCATCATGGACGTGCTCGGCCGCCCGATCGACGAAGCGGGTCCGGT
TGAAACCGACGAGCTGCGCGCGATCCACCAGAAGGCGCCGAAGTTCGACGAGCTGTCCCCGTCCGTGGAACTGCTCGAAA
CCGGCATCAAGGTTATTGACCTGATCTGCCCGTTCGCGAAGGGCGGCAAGGTGGGCCTGTTCGGCGGCGCCGGTGTGGGC
AAGACCGTGAACATGATGGAGCTGATCAACAACATCGCCAAGCAGCACTCGGGCTTGTCGGTGTTCGCTGGCGTGGGCGA
GCGTACCCGTGAGGGCAACGACTTCTACCACGAAATGAAGGACTCCAACGTTCTCGACAAGGTCGCGATGGTGTTCGGTC
AGATGAACGAACCCCCGGGCAACCGTCTGCGCGTCGCGCTGACCGGTCTGACCATGGCGGAGCGTTTCCGCGACGAAGGC
CGCGACATCCTGTTCTTCGTGGATAACATCTACCGCTACACCCTGGCCGGTACCGAAGTGTCCGCGCTGCTGGGTCGTAT
GCCTTCCGCGGTGGGTTACCAGCCGACGCTGGCCGAAGAAATGGGCCGTCTGCAGGAACGCATCACCTCGACCAAGGTGG
GCTCGATCACCTCGATCCAGGCCGTGTATGTGCCGGCGGATGACTTGACCGACCCGTCGCCTGCCACCACCTTCCTGCAC
CTCGACTCCACCGTCGTGCTGTCGCGTGACATCGCTGCGCTGGGTATCTACCCCGCCGTCGATCCGCTCGACTCCACCAG
CCGCCAGCTCGATCCGCTGGTCGTCGGTGAAGAGCACTACTCGGTCGCTCGCGCCGTGCAGCAGACCCTGCAGAAGTACA
AGGAACTGCGTGACATCATCGCGATTCTGGGTATGGACGAACTGTCGCCGGACGACAAGCTCGCCGTGGCCCGTGCGCGT
AAGATCCAGCGCTTCCTGTCGCAGCCCTTCCACGTTGCCGAAGTGTTCACCGGTTCGCCGGGCAAGTACGTTTCGCTGAA
GGACACCATCGCCGGCTTCAAGGCGATCGTGAACGGCGAATACGACCACCTGCCGGAACAGGCCTTCTACATGGTCGGCG
GCATCGAGGAAGTGCTCGAGAAGGCGAAGAAGCTGCAGTAA

Upstream 100 bases:

>100_bases
GGTCTACAACAAGACCCGCCAGGCCGCGATCACCAAGGAGCTGTCGGAAATCGTCGGTGGCGCCGCCGCGGTCTAACGGA
TTATTGATTAAGGAAAGACG

Downstream 100 bases:

>100_bases
TCCGCCATGCCCGCGCCGGTTCCGGCCGGCGCGGCTTTGAAAAGGACATACCATGGCAATGACGGTTCATGTCGATATCG
TCAGCGCGGAAGAGCAGATC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSNGTIVQCIGAVVDIQFPRDSMPKVYDALKLEDAADSFAEAGLTFEVQQQLGDGVVRTIALGSSDGLRRGMKVSNTGKP
ISVPVGHGTLGRIMDVLGRPIDEAGPVETDELRAIHQKAPKFDELSPSVELLETGIKVIDLICPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFLH
LDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPLVVGEEHYSVARAVQQTLQKYKELRDIIAILGMDELSPDDKLAVARAR
KIQRFLSQPFHVAEVFTGSPGKYVSLKDTIAGFKAIVNGEYDHLPEQAFYMVGGIEEVLEKAKKLQ

Sequences:

>Translated_466_residues
MSNGTIVQCIGAVVDIQFPRDSMPKVYDALKLEDAADSFAEAGLTFEVQQQLGDGVVRTIALGSSDGLRRGMKVSNTGKP
ISVPVGHGTLGRIMDVLGRPIDEAGPVETDELRAIHQKAPKFDELSPSVELLETGIKVIDLICPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFLH
LDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPLVVGEEHYSVARAVQQTLQKYKELRDIIAILGMDELSPDDKLAVARAR
KIQRFLSQPFHVAEVFTGSPGKYVSLKDTIAGFKAIVNGEYDHLPEQAFYMVGGIEEVLEKAKKLQ
>Mature_465_residues
SNGTIVQCIGAVVDIQFPRDSMPKVYDALKLEDAADSFAEAGLTFEVQQQLGDGVVRTIALGSSDGLRRGMKVSNTGKPI
SVPVGHGTLGRIMDVLGRPIDEAGPVETDELRAIHQKAPKFDELSPSVELLETGIKVIDLICPFAKGGKVGLFGGAGVGK
TVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEGR
DILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFLHL
DSTVVLSRDIAALGIYPAVDPLDSTSRQLDPLVVGEEHYSVARAVQQTLQKYKELRDIIAILGMDELSPDDKLAVARARK
IQRFLSQPFHVAEVFTGSPGKYVSLKDTIAGFKAIVNGEYDHLPEQAFYMVGGIEEVLEKAKKLQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=67.0912951167728, Blast_Score=632, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=324, Percent_Identity=26.2345679012346, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI50345984, Length=400, Percent_Identity=24.25, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI4757810, Length=400, Percent_Identity=24.25, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI19913428, Length=429, Percent_Identity=25.6410256410256, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI19913426, Length=397, Percent_Identity=24.4332493702771, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI1790170, Length=465, Percent_Identity=79.1397849462366, Blast_Score=756, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=324, Percent_Identity=30.8641975308642, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=26.7647058823529, Blast_Score=122, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=65.1804670912951, Blast_Score=618, Evalue=1e-177,
Organism=Caenorhabditis elegans, GI17510931, Length=350, Percent_Identity=26.5714285714286, Blast_Score=115, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17565854, Length=327, Percent_Identity=27.217125382263, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=331, Percent_Identity=25.3776435045317, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=331, Percent_Identity=25.3776435045317, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=350, Percent_Identity=25.1428571428571, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=292, Percent_Identity=23.6301369863014, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=66.0907127429806, Blast_Score=620, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25.8152173913043, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319603, Length=414, Percent_Identity=25.1207729468599, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=25.2173913043478, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=67.0212765957447, Blast_Score=632, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=470, Percent_Identity=64.468085106383, Blast_Score=597, Evalue=1e-171,
Organism=Drosophila melanogaster, GI281361666, Length=413, Percent_Identity=25.4237288135593, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24646341, Length=413, Percent_Identity=25.4237288135593, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136796, Length=413, Percent_Identity=25.4237288135593, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI20129479, Length=323, Percent_Identity=26.9349845201238, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583992, Length=326, Percent_Identity=26.0736196319018, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583988, Length=323, Percent_Identity=26.625386996904, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24583986, Length=323, Percent_Identity=26.625386996904, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24583984, Length=323, Percent_Identity=26.625386996904, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24658560, Length=401, Percent_Identity=23.4413965087282, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=48.4536082474227, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50614; Mature: 50482

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGTIVQCIGAVVDIQFPRDSMPKVYDALKLEDAADSFAEAGLTFEVQQQLGDGVVRTI
CCCCHHHHEEHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCEEEE
ALGSSDGLRRGMKVSNTGKPISVPVGHGTLGRIMDVLGRPIDEAGPVETDELRAIHQKAP
EECCCHHHHCCCEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
KFDELSPSVELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGLS
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
VFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEG
EEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHCC
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQ
CEEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
AVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPLVVGEEHY
EEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHCCCCCCCCCCCCHHHCCCEEECCHHH
SVARAVQQTLQKYKELRDIIAILGMDELSPDDKLAVARARKIQRFLSQPFHVAEVFTGSP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHEECCC
GKYVSLKDTIAGFKAIVNGEYDHLPEQAFYMVGGIEEVLEKAKKLQ
CCEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SNGTIVQCIGAVVDIQFPRDSMPKVYDALKLEDAADSFAEAGLTFEVQQQLGDGVVRTI
CCCHHHHEEHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCEEEE
ALGSSDGLRRGMKVSNTGKPISVPVGHGTLGRIMDVLGRPIDEAGPVETDELRAIHQKAP
EECCCHHHHCCCEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
KFDELSPSVELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGLS
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
VFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAERFRDEG
EEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHCC
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQ
CEEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
AVYVPADDLTDPSPATTFLHLDSTVVLSRDIAALGIYPAVDPLDSTSRQLDPLVVGEEHY
EEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHCCCCCCCCCCCCHHHCCCEEECCHHH
SVARAVQQTLQKYKELRDIIAILGMDELSPDDKLAVARARKIQRFLSQPFHVAEVFTGSP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHEECCC
GKYVSLKDTIAGFKAIVNGEYDHLPEQAFYMVGGIEEVLEKAKKLQ
CCEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA