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The map label for this gene is yfgB [C]

Identifier: 119896414

GI number: 119896414

Start: 139919

End: 141091

Strand: Reverse

Name: yfgB [C]

Synonym: azo0122

Alternate gene names: 119896414

Gene position: 141091-139919 (Counterclockwise)

Preceding gene: 119896420

Following gene: 119896408

Centisome position: 3.22

GC content: 71.01

Gene sequence:

>1173_bases
GTGGAGGACCAGGACCGCGTTGGCGAGCAGGCGGAAAACGGCCGCGGATTCCATCCGGCGATCGTAGCGGCTTCGGCCGC
GCAGCGGCACAGCGCGCGACCGCCGGTTCGCGCTACCATCCACCCCCTGATGCGGATCGACGACCTGACCCAACGCCTGC
GCGCACTCGGCGCCAAACCTGCCCACGAGCAACGGGTGCTGCGCGCCTGGGTGCAACGCAGCTCGATGGATAACCGCCGC
CAGGCGGCCAAGGATTTCCTGCCGCTGGCGCTGCGCGAGGCGCTGCCCGCGCTGACCGCCGAGCTGGAAGGGCTGGCGCG
GCTGCGCTCGCAGCACCCCGGCGAGGATGGCTCGGCCCGCCTGCTGGTGGAACTGGCCGACGGCCAGACGGTGGAGAGCG
TGCTGCTGCTGCGCGACGGTCTGTGCGTATCCACCCAGCTCGGTTGCGCGGTCGGCTGCGTGTTCTGCATGACCGGGCGC
GAGGGCCTGCTGCGCCAGCTCGGCAGCGCCGAGATCGTCGCCCAGGTGGTGCTGGCGCGCAGCCTGCGGCCGGTCAAGAA
AGTGGTGTTCATGGGGATGGGCGAACCGGCCCACAACCTCGACAACGTGCTCGAGGCGATCGACCTGCTCGGCACCGCCG
GCGGCATCGGCCACAAGAATCTGGTGTTCTCCACGGTGGGCGACTACCGGGTGTTCGAGCGCCTCCCCCGGCAGCGCGTG
AAGCCGGCACTGGCGCTGTCGCTGCACACCACCCGCGCCGACTTGCGCGCGCAACTGCTGCCGCGCGCGCCGCAGATCGC
GCCCCAGGAACTGGTGGAACTCGGCGAGCGCTATGCGCGCAGCACCGGTTATCCGATCCAGTACCAATGGACGCTGATCG
AAGGCGTGAACGACAGCCCGGAAGAAATGGACGGCATCGTCCGGCTGTTGCGGGGCAAGTACGCGCTGATGAACCTGATC
CCCTACAACAGCGTGCCCGAACTCGAATTCCGCCGGCCGGGCCGGGAGGCGGCGGTGGCGCTTGCGGCCTACCTGCACCG
CCACGGCGTGCTCGCCAAGCTGCGCCAGTCGGCCGGGCAGGACGTCGAAGGCGGCTGCGGCCAGCTGCGCGCGCGGGTGG
TGAAGATGGACCGCCGGCCGCGCACGGCGCGGGCGACGCCGCCCACCGCATGA

Upstream 100 bases:

>100_bases
GCAGCACGCGCAGGCGCACGTCACGCACCCAGCGCCAGTCGAGGGCGCCGCCGACGAGGATCAACACCAGCCCGGCCACC
ACGAAGAGCACGAAGCCCGC

Downstream 100 bases:

>100_bases
AACCGTAATCGCGGAGCCGGCGGCTGCCGGCTTGAATGAAAAGGGCCGGCTCCAGGCCGGCCCGTACTGCCCGCGGCGGT
CGGGCGAAGACGCCCGCCGC

Product: ribosomal RNA large subunit methyltransferase N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MEDQDRVGEQAENGRGFHPAIVAASAAQRHSARPPVRATIHPLMRIDDLTQRLRALGAKPAHEQRVLRAWVQRSSMDNRR
QAAKDFLPLALREALPALTAELEGLARLRSQHPGEDGSARLLVELADGQTVESVLLLRDGLCVSTQLGCAVGCVFCMTGR
EGLLRQLGSAEIVAQVVLARSLRPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGHKNLVFSTVGDYRVFERLPRQRV
KPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERYARSTGYPIQYQWTLIEGVNDSPEEMDGIVRLLRGKYALMNLI
PYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQLRARVVKMDRRPRTARATPPTA

Sequences:

>Translated_390_residues
MEDQDRVGEQAENGRGFHPAIVAASAAQRHSARPPVRATIHPLMRIDDLTQRLRALGAKPAHEQRVLRAWVQRSSMDNRR
QAAKDFLPLALREALPALTAELEGLARLRSQHPGEDGSARLLVELADGQTVESVLLLRDGLCVSTQLGCAVGCVFCMTGR
EGLLRQLGSAEIVAQVVLARSLRPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGHKNLVFSTVGDYRVFERLPRQRV
KPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERYARSTGYPIQYQWTLIEGVNDSPEEMDGIVRLLRGKYALMNLI
PYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQLRARVVKMDRRPRTARATPPTA
>Mature_390_residues
MEDQDRVGEQAENGRGFHPAIVAASAAQRHSARPPVRATIHPLMRIDDLTQRLRALGAKPAHEQRVLRAWVQRSSMDNRR
QAAKDFLPLALREALPALTAELEGLARLRSQHPGEDGSARLLVELADGQTVESVLLLRDGLCVSTQLGCAVGCVFCMTGR
EGLLRQLGSAEIVAQVVLARSLRPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGHKNLVFSTVGDYRVFERLPRQRV
KPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERYARSTGYPIQYQWTLIEGVNDSPEEMDGIVRLLRGKYALMNLI
PYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQLRARVVKMDRRPRTARATPPTA

Specific function: Unknown

COG id: COG0820

COG function: function code R; Predicted Fe-S-cluster redox enzyme

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. RlmN family [H]

Homologues:

Organism=Escherichia coli, GI1788865, Length=354, Percent_Identity=27.9661016949153, Blast_Score=143, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197
- InterPro:   IPR004383 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 42844; Mature: 42844

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDQDRVGEQAENGRGFHPAIVAASAAQRHSARPPVRATIHPLMRIDDLTQRLRALGAKP
CCCHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
AHEQRVLRAWVQRSSMDNRRQAAKDFLPLALREALPALTAELEGLARLRSQHPGEDGSAR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
LLVELADGQTVESVLLLRDGLCVSTQLGCAVGCVFCMTGREGLLRQLGSAEIVAQVVLAR
EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHH
SLRPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGHKNLVFSTVGDYRVFERLPRQRV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHC
KPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERYARSTGYPIQYQWTLIEGVNDSP
CHHHHHEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCH
EEMDGIVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DVEGGCGQLRARVVKMDRRPRTARATPPTA
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MEDQDRVGEQAENGRGFHPAIVAASAAQRHSARPPVRATIHPLMRIDDLTQRLRALGAKP
CCCHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
AHEQRVLRAWVQRSSMDNRRQAAKDFLPLALREALPALTAELEGLARLRSQHPGEDGSAR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
LLVELADGQTVESVLLLRDGLCVSTQLGCAVGCVFCMTGREGLLRQLGSAEIVAQVVLAR
EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHH
SLRPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGHKNLVFSTVGDYRVFERLPRQRV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHC
KPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERYARSTGYPIQYQWTLIEGVNDSP
CHHHHHEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCH
EEMDGIVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
DVEGGCGQLRARVVKMDRRPRTARATPPTA
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA