Click here to switch to the map view.

The map label for this gene is cycA1 [H]

Identifier: 119896382

GI number: 119896382

Start: 105850

End: 106314

Strand: Reverse

Name: cycA1 [H]

Synonym: azo0090

Alternate gene names: 119896382

Gene position: 106314-105850 (Counterclockwise)

Preceding gene: 119896384

Following gene: 119896375

Centisome position: 2.43

GC content: 64.73

Gene sequence:

>465_bases
ATGAAGAAAATCATCGCCCGCATCGCGTTCGGCATGGCCGCCTTCGCGCTCGCCAGCGCCGCTTCCGCGCAGGTCAAGCC
GGAAGACCAGATCAAGTACCGCAAGGCGGGCTACAGCTACATGATGAGCTGGAACATGGGCAAGATCAAGGCCAACCTGG
AAGGCAGCTACAACAAGGATCAGGTCGCCGCCGCCGCCAATGCGATCGCCGGCATCGCCAACTCCGGCATGGGCGCGCTG
TACGGGCCGGGCACCGAGAAGGCCGTCGGCGGCCAGACCACGCGGGTCAAGCCGGCGATGTTCACCGACAAGGAAGGCGT
GACCAAGGTCGCAGTGGACTTCAACAAGGCCGCCAACAACCTCGCCAAGGTGGCCGCCGACGGCGACGCCGCCGCGGTGA
AGGTCGCGTTCGGCGAAGTGGGCAAGACCTGCAAGGCCTGTCACGACCAGTACCGCGAAGAGTAA

Upstream 100 bases:

>100_bases
GTGAAGGTCCGAGAACCCGTTGTACTATCCCGCTCCGCTGTCCGCGCCCTCACGGGCGCGGCCGGCTGCAGCCCCAGACT
TCAACGACAACGAGGAAAAC

Downstream 100 bases:

>100_bases
GTCCGCGGTCACAAACAAGAAGCGCCGGGCATCCCCCGGCGCTTTTTTTATGGTTGGACGCTCACCAGGCGGGCGCGGCC
TCCGCCGGGGCGGGCGGCGG

Product: cytochrome c'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKKIIARIAFGMAAFALASAASAQVKPEDQIKYRKAGYSYMMSWNMGKIKANLEGSYNKDQVAAAANAIAGIANSGMGAL
YGPGTEKAVGGQTTRVKPAMFTDKEGVTKVAVDFNKAANNLAKVAADGDAAAVKVAFGEVGKTCKACHDQYREE

Sequences:

>Translated_154_residues
MKKIIARIAFGMAAFALASAASAQVKPEDQIKYRKAGYSYMMSWNMGKIKANLEGSYNKDQVAAAANAIAGIANSGMGAL
YGPGTEKAVGGQTTRVKPAMFTDKEGVTKVAVDFNKAANNLAKVAADGDAAAVKVAFGEVGKTCKACHDQYREE
>Mature_154_residues
MKKIIARIAFGMAAFALASAASAQVKPEDQIKYRKAGYSYMMSWNMGKIKANLEGSYNKDQVAAAANAIAGIANSGMGAL
YGPGTEKAVGGQTTRVKPAMFTDKEGVTKVAVDFNKAANNLAKVAADGDAAAVKVAFGEVGKTCKACHDQYREE

Specific function: Cytochrome c' is the most widely occurring bacterial c- type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127
- InterPro:   IPR015984 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 16134; Mature: 16134

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIARIAFGMAAFALASAASAQVKPEDQIKYRKAGYSYMMSWNMGKIKANLEGSYNKD
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEECCCCCCHH
QVAAAANAIAGIANSGMGALYGPGTEKAVGGQTTRVKPAMFTDKEGVTKVAVDFNKAANN
HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEHHHHHHH
LAKVAADGDAAAVKVAFGEVGKTCKACHDQYREE
HHHHHCCCCCEEEEEEHHHHCHHHHHHHHHHCCC
>Mature Secondary Structure
MKKIIARIAFGMAAFALASAASAQVKPEDQIKYRKAGYSYMMSWNMGKIKANLEGSYNKD
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEECCCCCCHH
QVAAAANAIAGIANSGMGALYGPGTEKAVGGQTTRVKPAMFTDKEGVTKVAVDFNKAANN
HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEHHHHHHH
LAKVAADGDAAAVKVAFGEVGKTCKACHDQYREE
HHHHHCCCCCEEEEEEHHHHCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7578212; 220951; 8230224 [H]