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The map label for this gene is rtcB [H]

Identifier: 119896371

GI number: 119896371

Start: 90144

End: 91352

Strand: Reverse

Name: rtcB [H]

Synonym: azo0079

Alternate gene names: 119896371

Gene position: 91352-90144 (Counterclockwise)

Preceding gene: 119896374

Following gene: 119896370

Centisome position: 2.09

GC content: 67.41

Gene sequence:

>1209_bases
ATGGCCATACAACTCACCCTCAACAAGGGCCGCGTCCCGATCAAGCTGTGGACGCGGGATATCGAACACGAAGCGCTGCA
GCAGCTGGTGAATCTGTCGCAGCTGCCCATCGTGGATCACCCGATCGCGGCGATGCCGGATGTGCACGCCGGTATCGGTG
CCACCATCGGGTCGGTGATTCCGACCGCGCACGCCATCATTCCGGCGGCGGTCGGCGTCGACATCGGCTGCGGCATGAAC
GCGCTGCGGCTGTCGCTGGATGCCGGACGGCTGCCGGACAACCTCGGCCGCCTGCGTTCGGCGATCGAGGCCGCGGTGCC
GGTGGGCTTCGAGCAGCACGATGAAAGCCGGGTGCGCGGCAGCGCCCACGCCCGCCAGGCGCGCCGCTTGGGCGACCGCC
TGGACGCGATCGTCGGCCGCCATCCCGGGCTGATGAAGATGCAGCGCCGCTTCAACACCACCTGGATCTGCCAACTCGGC
AGCCTGGGCGGCGGCAACCACTTCATCGAGCTGTGCGTGGACGAGGCCGACCAGCTATGGGTGATGCTGCATTCCGGCAG
CCGCGGCATCGGCAACGTCATCGGCCGCTACTTCATTGCCGCGGCCAAGAAGGACATGGGCCGTCACCTGCATGCGCTGC
CGGACAAGGATCTCGCCTACTTCAGCGAGGGCAGCGCGCTGTTCGACGACTACGTGGACGCGGTGCACTGGGCGCAGGAC
TACGCGATGGAGAACCGCCGCATGATGATGGCGCTGGTGGTGGAGGCGATCCGCCCGCTGCTGCCGGCCTTCAGCATCAC
CGAGGAGGCGATCAACTGCCACCACAACTACGTGGCGCGCGAGACCCACTTCGGCGAGTCGCTCTATGTCACCCGCAAGG
GCGCGATCCGCGCCGGCGCCGGCGAGCTGGGCATCATCCCCGGCAGCATGGGGGTGAAGAGCTACATCGTGCGCGGGCTG
GGCAATGCCGCGTCGTACTGCTCGTGCTCGCACGGCGCCGGCCGCCGCATGAGCCGCAGCGAGGCCAAGCGGCGCTTCAG
CCGCTTCGACCTCGAAGCCCAGACCGCCGGCGTGGAATGCCGCAAGGACGGCGGCGTGATCGACGAGATTCCCGCCGCCT
ACAAGAACATCGACGAGGTCATGGCCAACCAGACCGATCTCGTCGAAGTGGTGCACACCCTCAAGCAGGTGCTCTGCGTC
AAAGGCTGA

Upstream 100 bases:

>100_bases
GTGCCGCCATTGCCTGAAGCCCTGGTCTTCCCGGCCGGGGCTTTTTGTTTATCCGTCCGCCGTGCGATCGCGCCGGCGGC
AGGCAATGGAAAAGGCAGCA

Downstream 100 bases:

>100_bases
AGCCGGCGCCGCGCACTGTTGTGACCGAAACATCCGGCGGGCGGGTTATCCACAGCCGTCCGCGCCTACCGACCAGGAGA
ACCGACATGTCTGCACTCAC

Product: rtcB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MAIQLTLNKGRVPIKLWTRDIEHEALQQLVNLSQLPIVDHPIAAMPDVHAGIGATIGSVIPTAHAIIPAAVGVDIGCGMN
ALRLSLDAGRLPDNLGRLRSAIEAAVPVGFEQHDESRVRGSAHARQARRLGDRLDAIVGRHPGLMKMQRRFNTTWICQLG
SLGGGNHFIELCVDEADQLWVMLHSGSRGIGNVIGRYFIAAAKKDMGRHLHALPDKDLAYFSEGSALFDDYVDAVHWAQD
YAMENRRMMMALVVEAIRPLLPAFSITEEAINCHHNYVARETHFGESLYVTRKGAIRAGAGELGIIPGSMGVKSYIVRGL
GNAASYCSCSHGAGRRMSRSEAKRRFSRFDLEAQTAGVECRKDGGVIDEIPAAYKNIDEVMANQTDLVEVVHTLKQVLCV
KG

Sequences:

>Translated_402_residues
MAIQLTLNKGRVPIKLWTRDIEHEALQQLVNLSQLPIVDHPIAAMPDVHAGIGATIGSVIPTAHAIIPAAVGVDIGCGMN
ALRLSLDAGRLPDNLGRLRSAIEAAVPVGFEQHDESRVRGSAHARQARRLGDRLDAIVGRHPGLMKMQRRFNTTWICQLG
SLGGGNHFIELCVDEADQLWVMLHSGSRGIGNVIGRYFIAAAKKDMGRHLHALPDKDLAYFSEGSALFDDYVDAVHWAQD
YAMENRRMMMALVVEAIRPLLPAFSITEEAINCHHNYVARETHFGESLYVTRKGAIRAGAGELGIIPGSMGVKSYIVRGL
GNAASYCSCSHGAGRRMSRSEAKRRFSRFDLEAQTAGVECRKDGGVIDEIPAAYKNIDEVMANQTDLVEVVHTLKQVLCV
KG
>Mature_401_residues
AIQLTLNKGRVPIKLWTRDIEHEALQQLVNLSQLPIVDHPIAAMPDVHAGIGATIGSVIPTAHAIIPAAVGVDIGCGMNA
LRLSLDAGRLPDNLGRLRSAIEAAVPVGFEQHDESRVRGSAHARQARRLGDRLDAIVGRHPGLMKMQRRFNTTWICQLGS
LGGGNHFIELCVDEADQLWVMLHSGSRGIGNVIGRYFIAAAKKDMGRHLHALPDKDLAYFSEGSALFDDYVDAVHWAQDY
AMENRRMMMALVVEAIRPLLPAFSITEEAINCHHNYVARETHFGESLYVTRKGAIRAGAGELGIIPGSMGVKSYIVRGLG
NAASYCSCSHGAGRRMSRSEAKRRFSRFDLEAQTAGVECRKDGGVIDEIPAAYKNIDEVMANQTDLVEVVHTLKQVLCVK
G

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=436, Percent_Identity=28.4403669724771, Blast_Score=127, Evalue=2e-29,
Organism=Escherichia coli, GI2367224, Length=403, Percent_Identity=56.3275434243176, Blast_Score=444, Evalue=1e-126,
Organism=Caenorhabditis elegans, GI17506665, Length=425, Percent_Identity=27.0588235294118, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24585217, Length=433, Percent_Identity=25.635103926097, Blast_Score=106, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43868; Mature: 43737

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQLTLNKGRVPIKLWTRDIEHEALQQLVNLSQLPIVDHPIAAMPDVHAGIGATIGSVI
CEEEEEECCCCEEEEEHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
PTAHAIIPAAVGVDIGCGMNALRLSLDAGRLPDNLGRLRSAIEAAVPVGFEQHDESRVRG
HHHHHHHHHHHCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
SAHARQARRLGDRLDAIVGRHPGLMKMQRRFNTTWICQLGSLGGGNHFIELCVDEADQLW
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCEEE
VMLHSGSRGIGNVIGRYFIAAAKKDMGRHLHALPDKDLAYFSEGSALFDDYVDAVHWAQD
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
YAMENRRMMMALVVEAIRPLLPAFSITEEAINCHHNYVARETHFGESLYVTRKGAIRAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCC
GELGIIPGSMGVKSYIVRGLGNAASYCSCSHGAGRRMSRSEAKRRFSRFDLEAQTAGVEC
CCCEECCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCEE
RKDGGVIDEIPAAYKNIDEVMANQTDLVEVVHTLKQVLCVKG
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIQLTLNKGRVPIKLWTRDIEHEALQQLVNLSQLPIVDHPIAAMPDVHAGIGATIGSVI
EEEEEECCCCEEEEEHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
PTAHAIIPAAVGVDIGCGMNALRLSLDAGRLPDNLGRLRSAIEAAVPVGFEQHDESRVRG
HHHHHHHHHHHCCCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
SAHARQARRLGDRLDAIVGRHPGLMKMQRRFNTTWICQLGSLGGGNHFIELCVDEADQLW
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCEEE
VMLHSGSRGIGNVIGRYFIAAAKKDMGRHLHALPDKDLAYFSEGSALFDDYVDAVHWAQD
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHH
YAMENRRMMMALVVEAIRPLLPAFSITEEAINCHHNYVARETHFGESLYVTRKGAIRAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCC
GELGIIPGSMGVKSYIVRGLGNAASYCSCSHGAGRRMSRSEAKRRFSRFDLEAQTAGVEC
CCCEECCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCEE
RKDGGVIDEIPAAYKNIDEVMANQTDLVEVVHTLKQVLCVKG
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]