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The map label for this gene is rpoE [C]

Identifier: 119896367

GI number: 119896367

Start: 87379

End: 87978

Strand: Direct

Name: rpoE [C]

Synonym: azo0075

Alternate gene names: 119896367

Gene position: 87379-87978 (Clockwise)

Preceding gene: 119896366

Following gene: 119896368

Centisome position: 2.0

GC content: 73.33

Gene sequence:

>600_bases
ATGAACGACGGCGCGCTCTCCGGCGGCGCAGCCGACGACGGTGCGCTGATGCTGGCCTATGCCGCCGGCGACGCCGCCGC
CTTCGAACAGCTCTACGCCCGCCACCGCCGCGGGCTGTACGCCTACCTGCAGCGCCAGGCGCCGCGCCCCGGCTGGGTGG
ACGACCTGTTCCAGGAAACCTGGCTGGCGGTGATCGGCGCCCGCGCCGGCTACCGCCCGAGCGCCGCGTTCCGCACCTGG
CTATACGGCATCGCCCGCAACAAGCTGATCGACCGCATCCGCCGCAGTGACGCCGTGCTGCTGAGCGACTTCCTCGCCGA
CGATGGCGACGACGGCGAACTGCTCGACCGCCTCGGCGCCGATGCCGGGCACGACCCGGCGCAACTGCTTGCCCGCCGCC
GCGACGGCGACGCCCTGCACGCCGCGCTGCGCACGCTGCCCGCGCCGCAGCGCGAAGTCTTCCTGCTGCGCGAACAGGCC
GACATGAGCCTTACGGAGATCGCCGCGCTGGTCGGCGTGCCGCTGGAAACCGCCAAAAGCCGGCTGCGCTACGCCATCGC
CCGGCTGCGCGCCGCACTTGCCGAGGAGGTCGCCGGATGA

Upstream 100 bases:

>100_bases
CCGCCCGCGGCGACGACCGCTACGGCCACCGCGGCGAATTCCTCAACCTCGTGCGCCTCGCCGGCTCGCTGGCGAGCGCC
CCGCAGGCTGCGGCCCGCGA

Downstream 100 bases:

>100_bases
CGCGCCCCACCCCCGAACACGAACCGCAGGACGCCGCCGTCAGCGCCGCCTTCCGCGGCCTCGACACGCCCGAACCGCCG
CCGGCACTCGATGCCGCCAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-70 Factor; ECF SubfamilyRNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNDGALSGGAADDGALMLAYAAGDAAAFEQLYARHRRGLYAYLQRQAPRPGWVDDLFQETWLAVIGARAGYRPSAAFRTW
LYGIARNKLIDRIRRSDAVLLSDFLADDGDDGELLDRLGADAGHDPAQLLARRRDGDALHAALRTLPAPQREVFLLREQA
DMSLTEIAALVGVPLETAKSRLRYAIARLRAALAEEVAG

Sequences:

>Translated_199_residues
MNDGALSGGAADDGALMLAYAAGDAAAFEQLYARHRRGLYAYLQRQAPRPGWVDDLFQETWLAVIGARAGYRPSAAFRTW
LYGIARNKLIDRIRRSDAVLLSDFLADDGDDGELLDRLGADAGHDPAQLLARRRDGDALHAALRTLPAPQREVFLLREQA
DMSLTEIAALVGVPLETAKSRLRYAIARLRAALAEEVAG
>Mature_199_residues
MNDGALSGGAADDGALMLAYAAGDAAAFEQLYARHRRGLYAYLQRQAPRPGWVDDLFQETWLAVIGARAGYRPSAAFRTW
LYGIARNKLIDRIRRSDAVLLSDFLADDGDDGELLDRLGADAGHDPAQLLARRRDGDALHAALRTLPAPQREVFLLREQA
DMSLTEIAALVGVPLETAKSRLRYAIARLRAALAEEVAG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788926, Length=189, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21687; Mature: 21687

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDGALSGGAADDGALMLAYAAGDAAAFEQLYARHRRGLYAYLQRQAPRPGWVDDLFQET
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
WLAVIGARAGYRPSAAFRTWLYGIARNKLIDRIRRSDAVLLSDFLADDGDDGELLDRLGA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
DAGHDPAQLLARRRDGDALHAALRTLPAPQREVFLLREQADMSLTEIAALVGVPLETAKS
CCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
RLRYAIARLRAALAEEVAG
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDGALSGGAADDGALMLAYAAGDAAAFEQLYARHRRGLYAYLQRQAPRPGWVDDLFQET
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
WLAVIGARAGYRPSAAFRTWLYGIARNKLIDRIRRSDAVLLSDFLADDGDDGELLDRLGA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
DAGHDPAQLLARRRDGDALHAALRTLPAPQREVFLLREQADMSLTEIAALVGVPLETAKS
CCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH
RLRYAIARLRAALAEEVAG
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA