Click here to switch to the map view.

The map label for this gene is xylR [C]

Identifier: 119896332

GI number: 119896332

Start: 45701

End: 46612

Strand: Reverse

Name: xylR [C]

Synonym: azo0040

Alternate gene names: 119896332

Gene position: 46612-45701 (Counterclockwise)

Preceding gene: 119896335

Following gene: 119896324

Centisome position: 1.07

GC content: 68.42

Gene sequence:

>912_bases
ATGACGGGAGTGTTTGCATCGACCCCGCAGCTCATCGCGCGCGCCACCGCCTCTGCGCCGGACTACGTGATGGAAGGCCA
CAATGGCGACATCTTCGGCGCGCGCTGGAACCACCCCGCCGGCGAATCCCAGCTGCGCCGCAACGCCGAGCATGTGCTGG
TCTATCACCTGTCGGGCAACACCGACGTCGAGCGCCTGCAGCAGGGCGTGGTCACCGGCTTCCGTTCGCGCGTCGGCTCG
GTCACCTTCATGCCGCGCGATTCCGAATCCGACTGGCGGCTGGGCGGCAACACCCAGGTCATCCACCTCTACCTGTCGCA
GGACCTCATGGACGCCTTCGCCCGCGACACGCTGGAGCGCGACGCCTGTCCGGAAATCGACGACTTCTTCGCGGTGAACG
ACACCTGGCTGGACGGCTTCTTCCGCATGCTGGCCAGCGAGGCGCCGCCCTCCGCCGGCGCCGGCACCCGCCTGGAAACC
CTGGTGCTGGACCAGATCCAGAGCCTGCTGGTGCGCCACCTCGTCACCCGCTATGCCAGGGAACGCCGCGCCGACACCGA
GCGCGCGCTGGTGCGCGGCGGCAGCGGCAGCCAGCTGCGCCAGAGCGTGCTGAAGAAGATCACCGCGCTGATCCACGAAC
GCCTGCACGAGGACATCTGCCTGCAGGACCTGGCCGACCTCGCCTGCATCTCCAAGGACCACTTCCTGCGCGCCTTCCGC
GACACCGTCGGGCAGACGCCCTACCACTACGTGCTGTCGCAGCGGCTGGAACGGGCGCGGGCGCTGCTAAGGGAAGAGCC
GAACCTGCCGGTGGCGGAGATTGCGCGACGCTGCGGGTTCAAGAACCTGAGCCACTTTTCGGCGACGTTCAGGCGGATGA
CGGGCGTGAGCCCGAAGGGCTACCGGGGCTGA

Upstream 100 bases:

>100_bases
GATAACTTTAGCGATATCTGCAAAGTCGCCCGCTGTAATTGGAAAACGGCGCGCCTACAATGGCTTGCATAACAAAAGCG
GTACCCCTACGGAGGAGACA

Downstream 100 bases:

>100_bases
GCGCGGGGCGGGCGGGTGCCCGCCCGACGCTCAAGCGGGGGCGGACGCCCGCCGGGCCCGCGCGGTGTGCAGCTTGCGGT
AACTGTCGATCAGGCGCTGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator; AraC-Family Transcriptional Regulator; Transcription Regulator AraC Family; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Protein; Transcriptional Regulator AraC-Type; Transcriptional Regulator Arac Family; AraC Family Regulatory Protein; Transcriptional Activator; Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator ChbR; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein; AraC Family Regulatory Helix-Turn-Helix

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTGVFASTPQLIARATASAPDYVMEGHNGDIFGARWNHPAGESQLRRNAEHVLVYHLSGNTDVERLQQGVVTGFRSRVGS
VTFMPRDSESDWRLGGNTQVIHLYLSQDLMDAFARDTLERDACPEIDDFFAVNDTWLDGFFRMLASEAPPSAGAGTRLET
LVLDQIQSLLVRHLVTRYARERRADTERALVRGGSGSQLRQSVLKKITALIHERLHEDICLQDLADLACISKDHFLRAFR
DTVGQTPYHYVLSQRLERARALLREEPNLPVAEIARRCGFKNLSHFSATFRRMTGVSPKGYRG

Sequences:

>Translated_303_residues
MTGVFASTPQLIARATASAPDYVMEGHNGDIFGARWNHPAGESQLRRNAEHVLVYHLSGNTDVERLQQGVVTGFRSRVGS
VTFMPRDSESDWRLGGNTQVIHLYLSQDLMDAFARDTLERDACPEIDDFFAVNDTWLDGFFRMLASEAPPSAGAGTRLET
LVLDQIQSLLVRHLVTRYARERRADTERALVRGGSGSQLRQSVLKKITALIHERLHEDICLQDLADLACISKDHFLRAFR
DTVGQTPYHYVLSQRLERARALLREEPNLPVAEIARRCGFKNLSHFSATFRRMTGVSPKGYRG
>Mature_302_residues
TGVFASTPQLIARATASAPDYVMEGHNGDIFGARWNHPAGESQLRRNAEHVLVYHLSGNTDVERLQQGVVTGFRSRVGSV
TFMPRDSESDWRLGGNTQVIHLYLSQDLMDAFARDTLERDACPEIDDFFAVNDTWLDGFFRMLASEAPPSAGAGTRLETL
VLDQIQSLLVRHLVTRYARERRADTERALVRGGSGSQLRQSVLKKITALIHERLHEDICLQDLADLACISKDHFLRAFRD
TVGQTPYHYVLSQRLERARALLREEPNLPVAEIARRCGFKNLSHFSATFRRMTGVSPKGYRG

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34082; Mature: 33951

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVFASTPQLIARATASAPDYVMEGHNGDIFGARWNHPAGESQLRRNAEHVLVYHLSGN
CCCCCCCCHHHHHHHHCCCCHHHEECCCCCEECCCCCCCCCHHHHHCCCCEEEEEEECCC
TDVERLQQGVVTGFRSRVGSVTFMPRDSESDWRLGGNTQVIHLYLSQDLMDAFARDTLER
CCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHHHHH
DACPEIDDFFAVNDTWLDGFFRMLASEAPPSAGAGTRLETLVLDQIQSLLVRHLVTRYAR
CCCCCCHHHEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ERRADTERALVRGGSGSQLRQSVLKKITALIHERLHEDICLQDLADLACISKDHFLRAFR
HHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTVGQTPYHYVLSQRLERARALLREEPNLPVAEIARRCGFKNLSHFSATFRRMTGVSPKG
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
YRG
CCC
>Mature Secondary Structure 
TGVFASTPQLIARATASAPDYVMEGHNGDIFGARWNHPAGESQLRRNAEHVLVYHLSGN
CCCCCCCHHHHHHHHCCCCHHHEECCCCCEECCCCCCCCCHHHHHCCCCEEEEEEECCC
TDVERLQQGVVTGFRSRVGSVTFMPRDSESDWRLGGNTQVIHLYLSQDLMDAFARDTLER
CCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEECCCCEEEEEHHHHHHHHHHHHHHHHH
DACPEIDDFFAVNDTWLDGFFRMLASEAPPSAGAGTRLETLVLDQIQSLLVRHLVTRYAR
CCCCCCHHHEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ERRADTERALVRGGSGSQLRQSVLKKITALIHERLHEDICLQDLADLACISKDHFLRAFR
HHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTVGQTPYHYVLSQRLERARALLREEPNLPVAEIARRCGFKNLSHFSATFRRMTGVSPKG
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
YRG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA