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The map label for this gene is bdhR [H]

Identifier: 119896304

GI number: 119896304

Start: 16203

End: 17150

Strand: Direct

Name: bdhR [H]

Synonym: azo0012

Alternate gene names: 119896304

Gene position: 16203-17150 (Clockwise)

Preceding gene: 119896302

Following gene: 119896305

Centisome position: 0.37

GC content: 70.78

Gene sequence:

>948_bases
ATGAACGAAGTGCGTGCGCTCTCGCTGTTCGTCCGCGCCGCCACGCTCGGCAGCCTGCGGCGGGCGGCGATCGACCAGGG
CATCTCGCCGCAGGCCGCCAGCCATGCGGTGATGCAGCTGGAGAAATCGCTCGGCGTGCGGCTGTTCCACCGCACCACCC
GCCGGCTGAGCCTGACCGAGGACGGCCGCATGCTGTTCGAGCGCAGTTCGCCGGCGCTCGACGTGCTGTTCGCGGCGATC
GAGGACGTGCGCAAGGCGCGCGACGACGTCGGCGGCCTGCTGACCCTCAGCGCGCCCACCGCGCTCGGCCGCACGATGCT
GTGGCCGCTGATCGTCGAGTTCGCCCGGCTGCATCCCGAGATCCGCGTTGATGCGCATTTCGACGACCACCTCACCGACC
TCGTCGCCGAGCGCGCCGACGTCGGCTTCCGCGGTGGCGCCTCGCCCGCCGAAGGCACCATCGCCCGCCGCCTGCTGCCG
ATCCAGCTGATCGTCTGCGCCGCGCCGGACTACCTGGCGCGCCACGGTGCGCCGCGCACCATCGACGATCTGGTCCACCA
CCGCTGCAGCGGCTACCGCCAGGCCAATACCGGCAAGCTCGCGCCGTGGGAATTCCTCGTCGATGGCGAGACCATCCGCC
GCGACGTGCCGGCGGTGCTGAGCTGCAACGACGTGGACGCCGAAGTCGACGCGGTGTTGTCCGGGAGCGCGATCGGCCAG
CTCGCCAGCTTCTCGGCGGTCACCCACATCCGCGCAGGACGGCTGGTGCCGCTGCTGGTCCGTCATGTCGCTGAACGCGA
CGGCATCCACCTCTATTACCGCCGCCGCAGCGAGCAGCCGCGCCGCACGCGCGCCTTCATCGATTTCATCGTCGGCCGCC
TCGCCGACCACCCGGATTTCCACCTCGGCCGCGAGGAACTCGAACGGCTGGTCGCCGAACAGTCCTGA

Upstream 100 bases:

>100_bases
TGTGTAGAAGGTGAGCGAAGCTTAGGCCGGGCGATAAGCAAGCAATAGATGGCTATCGCTGTACTATTCATCAACTGAAA
TTTGCCAATCGAGACCACCG

Downstream 100 bases:

>100_bases
GCGCGGCTGCGTGCGACCATCGGCGACAAACGCCGCACGGTCACGGCATCATCCGGTTTTGCCCCCCGTCTCCCGCCAGT
GATGCCGCAGCTCACCCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNEVRALSLFVRAATLGSLRRAAIDQGISPQAASHAVMQLEKSLGVRLFHRTTRRLSLTEDGRMLFERSSPALDVLFAAI
EDVRKARDDVGGLLTLSAPTALGRTMLWPLIVEFARLHPEIRVDAHFDDHLTDLVAERADVGFRGGASPAEGTIARRLLP
IQLIVCAAPDYLARHGAPRTIDDLVHHRCSGYRQANTGKLAPWEFLVDGETIRRDVPAVLSCNDVDAEVDAVLSGSAIGQ
LASFSAVTHIRAGRLVPLLVRHVAERDGIHLYYRRRSEQPRRTRAFIDFIVGRLADHPDFHLGREELERLVAEQS

Sequences:

>Translated_315_residues
MNEVRALSLFVRAATLGSLRRAAIDQGISPQAASHAVMQLEKSLGVRLFHRTTRRLSLTEDGRMLFERSSPALDVLFAAI
EDVRKARDDVGGLLTLSAPTALGRTMLWPLIVEFARLHPEIRVDAHFDDHLTDLVAERADVGFRGGASPAEGTIARRLLP
IQLIVCAAPDYLARHGAPRTIDDLVHHRCSGYRQANTGKLAPWEFLVDGETIRRDVPAVLSCNDVDAEVDAVLSGSAIGQ
LASFSAVTHIRAGRLVPLLVRHVAERDGIHLYYRRRSEQPRRTRAFIDFIVGRLADHPDFHLGREELERLVAEQS
>Mature_315_residues
MNEVRALSLFVRAATLGSLRRAAIDQGISPQAASHAVMQLEKSLGVRLFHRTTRRLSLTEDGRMLFERSSPALDVLFAAI
EDVRKARDDVGGLLTLSAPTALGRTMLWPLIVEFARLHPEIRVDAHFDDHLTDLVAERADVGFRGGASPAEGTIARRLLP
IQLIVCAAPDYLARHGAPRTIDDLVHHRCSGYRQANTGKLAPWEFLVDGETIRRDVPAVLSCNDVDAEVDAVLSGSAIGQ
LASFSAVTHIRAGRLVPLLVRHVAERDGIHLYYRRRSEQPRRTRAFIDFIVGRLADHPDFHLGREELERLVAEQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=35.4385964912281, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=34.2372881355932, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=30.4635761589404, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=28.8194444444444, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87081978, Length=303, Percent_Identity=27.0627062706271, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=25.1748251748252, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=25.7731958762887, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788706, Length=193, Percent_Identity=26.9430051813472, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788481, Length=201, Percent_Identity=30.3482587064677, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=301, Percent_Identity=24.5847176079734, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34915; Mature: 34915

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEVRALSLFVRAATLGSLRRAAIDQGISPQAASHAVMQLEKSLGVRLFHRTTRRLSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
DGRMLFERSSPALDVLFAAIEDVRKARDDVGGLLTLSAPTALGRTMLWPLIVEFARLHPE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
IRVDAHFDDHLTDLVAERADVGFRGGASPAEGTIARRLLPIQLIVCAAPDYLARHGAPRT
EEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHCCCCCC
IDDLVHHRCSGYRQANTGKLAPWEFLVDGETIRRDVPAVLSCNDVDAEVDAVLSGSAIGQ
HHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHCCCCEEECCCCCHHHHHHHCCHHHHH
LASFSAVTHIRAGRLVPLLVRHVAERDGIHLYYRRRSEQPRRTRAFIDFIVGRLADHPDF
HHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
HLGREELERLVAEQS
CCCHHHHHHHHHCCC
>Mature Secondary Structure
MNEVRALSLFVRAATLGSLRRAAIDQGISPQAASHAVMQLEKSLGVRLFHRTTRRLSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
DGRMLFERSSPALDVLFAAIEDVRKARDDVGGLLTLSAPTALGRTMLWPLIVEFARLHPE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
IRVDAHFDDHLTDLVAERADVGFRGGASPAEGTIARRLLPIQLIVCAAPDYLARHGAPRT
EEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHCCCCCC
IDDLVHHRCSGYRQANTGKLAPWEFLVDGETIRRDVPAVLSCNDVDAEVDAVLSGSAIGQ
HHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHCCCCEEECCCCCHHHHHHHCCHHHHH
LASFSAVTHIRAGRLVPLLVRHVAERDGIHLYYRRRSEQPRRTRAFIDFIVGRLADHPDF
HHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
HLGREELERLVAEQS
CCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]