BacMap

Definition	Azoarcus sp. BH72 chromosome, complete genome.
Accession	NC_008702
Length	4,376,040

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The map label for this gene is yusZ [H]

Identifier: 119896303

GI number: 119896303

Start: 15231

End: 16085

Strand: Reverse

Name: yusZ [H]

Synonym: azo0011

Alternate gene names: 119896303

Gene position: 16085-15231 (Counterclockwise)

Preceding gene: 119896306

Following gene: NA

Centisome position: 0.37

GC content: 69.59

Gene sequence:

>855_bases
ATGAACACCAAGCAAACCACCTTCAAGCGCGTCTGGTTCATCACCGGCGCCTCGCGCGGTCTCGGCGCCCTGATCGCCCG
TGCGGCGCTGGACGACGGCAACGCCGTGGTCGCCACCGGCCGCAATGCCGATGTCGTCCGCGAACGCCTCGGCGACCATC
CCGGCCTGCTCGCGCTGGCCCTCGACGTCACCGTCGAAACCCAGGCCCAGGCCGCGATCGAGGCCGCCGTGCGCCGCTTC
GGCCGCATCGACGTGCTGATCAACAACGCCGGCCACGGCCTGCTCGGCGCGGTCGAGGAATCGAGCGACGCCGACACGCG
GCGGATGTACGAAACCAACGTGTTCGGCCTGCTCAACGTGACGCGCGCCGTGCTGCCGGTGATGCGTGCCCAGCGCGCCG
GCCACCTGATCAACTTCTCGTCGATCGGCGGCTACAGCTCGGCGGTGGGCTTCGGCGTGTATTGCTCGACCAAGTTCGCG
GTCGAGGGCCTGTCCGAGGCGCTGCACGCCGAACTCGCGCCGCTCGGCGTAGCTGTCACCGTGGTCGAACCCGGCTACTT
CCGCACCGACTTCCTCGACTCGACCTCGCTGGTGGTCGCGCCACAGGTCATCCCCGACTACGCCGCCACCGCCGGCCAGG
TCCGCGAGGGCGCGAAGCAGCTCAACCACAAGCAGCCCGGCGACCCGGTGCGCCTTGCGCAGGCGATGTTGCGCCTGGTG
GATGCCGAACGCCCGCCGCTGCGCCTGGCACTGGGCAGCGACACCTTGCGCGCGATCGCGGAGAAGAATGCTCGGGTGGA
TGCGGAGACGGCGGAATGGGCGGAACTGTCGCGGTCGACGGATTTTCCGGGGTAA

Upstream 100 bases:

>100_bases
AAATTTCAGTTGATGAATAGTACAGCGATAGCCATCTATTGCTTGCTTATCGCCCGGCCTAAGCTTCGCTCACCTTCTAC
ACACACCAAGGAGCAAGGCC

Downstream 100 bases:

>100_bases
GGGAGGTCAGCGGTGCGGGGGCGTGTCAGTAGCACCCCGACCGCCGGTCCAGAAAAGCGAAAAGGCGAAAACCCGCCCGG
GTTTTCGCCTTTTCCCCTTG

Product: short-chain dehydrogenase family protein

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNTKQTTFKRVWFITGASRGLGALIARAALDDGNAVVATGRNADVVRERLGDHPGLLALALDVTVETQAQAAIEAAVRRF
GRIDVLINNAGHGLLGAVEESSDADTRRMYETNVFGLLNVTRAVLPVMRAQRAGHLINFSSIGGYSSAVGFGVYCSTKFA
VEGLSEALHAELAPLGVAVTVVEPGYFRTDFLDSTSLVVAPQVIPDYAATAGQVREGAKQLNHKQPGDPVRLAQAMLRLV
DAERPPLRLALGSDTLRAIAEKNARVDAETAEWAELSRSTDFPG

Sequences:

>Translated_284_residues
MNTKQTTFKRVWFITGASRGLGALIARAALDDGNAVVATGRNADVVRERLGDHPGLLALALDVTVETQAQAAIEAAVRRF
GRIDVLINNAGHGLLGAVEESSDADTRRMYETNVFGLLNVTRAVLPVMRAQRAGHLINFSSIGGYSSAVGFGVYCSTKFA
VEGLSEALHAELAPLGVAVTVVEPGYFRTDFLDSTSLVVAPQVIPDYAATAGQVREGAKQLNHKQPGDPVRLAQAMLRLV
DAERPPLRLALGSDTLRAIAEKNARVDAETAEWAELSRSTDFPG
>Mature_284_residues
MNTKQTTFKRVWFITGASRGLGALIARAALDDGNAVVATGRNADVVRERLGDHPGLLALALDVTVETQAQAAIEAAVRRF
GRIDVLINNAGHGLLGAVEESSDADTRRMYETNVFGLLNVTRAVLPVMRAQRAGHLINFSSIGGYSSAVGFGVYCSTKFA
VEGLSEALHAELAPLGVAVTVVEPGYFRTDFLDSTSLVVAPQVIPDYAATAGQVREGAKQLNHKQPGDPVRLAQAMLRLV
DAERPPLRLALGSDTLRAIAEKNARVDAETAEWAELSRSTDFPG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=258, Percent_Identity=31.3953488372093, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI20149619, Length=252, Percent_Identity=30.952380952381, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI150247226, Length=259, Percent_Identity=33.5907335907336, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4503817, Length=180, Percent_Identity=30.5555555555556, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI22507405, Length=189, Percent_Identity=34.9206349206349, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI223718074, Length=256, Percent_Identity=32.421875, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI40548397, Length=212, Percent_Identity=32.0754716981132, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI214010158, Length=212, Percent_Identity=32.0754716981132, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI214010156, Length=212, Percent_Identity=32.0754716981132, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI22758144, Length=212, Percent_Identity=32.0754716981132, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19743808, Length=191, Percent_Identity=35.6020942408377, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI59889578, Length=214, Percent_Identity=30.3738317757009, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=30.2083333333333, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI44680136, Length=119, Percent_Identity=39.4957983193277, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI44680133, Length=119, Percent_Identity=39.4957983193277, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI17738292, Length=119, Percent_Identity=39.4957983193277, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI142976729, Length=204, Percent_Identity=27.9411764705882, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=30.6010928961749, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI50726952, Length=193, Percent_Identity=34.7150259067358, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI32483357, Length=196, Percent_Identity=27.5510204081633, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI119392083, Length=184, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=31.1224489795918, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI5031737, Length=196, Percent_Identity=31.1224489795918, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI40254986, Length=174, Percent_Identity=30.4597701149425, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4758504, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=159, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=24.4897959183673, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=27.5510204081633, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI210032112, Length=132, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI157739938, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40807363, Length=200, Percent_Identity=27, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4504503, Length=188, Percent_Identity=30.3191489361702, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI7705925, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=229, Percent_Identity=32.7510917030568, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=36.1581920903955, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=32.972972972973, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=30.6451612903226, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082160, Length=183, Percent_Identity=28.9617486338798, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786812, Length=183, Percent_Identity=29.5081967213115, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787905, Length=200, Percent_Identity=31, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI2367365, Length=182, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=29.3478260869565, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787526, Length=205, Percent_Identity=28.780487804878, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=34.9206349206349, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=188, Percent_Identity=33.5106382978723, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=195, Percent_Identity=32.8205128205128, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=198, Percent_Identity=29.2929292929293, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=190, Percent_Identity=29.4736842105263, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=199, Percent_Identity=28.1407035175879, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=242, Percent_Identity=26.0330578512397, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=113, Percent_Identity=35.3982300884956, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=250, Percent_Identity=28.4, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=28.2828282828283, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=26.1780104712042, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=272, Percent_Identity=23.5294117647059, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=272, Percent_Identity=23.5294117647059, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=28.9340101522843, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=202, Percent_Identity=31.1881188118812, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=193, Percent_Identity=27.979274611399, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=212, Percent_Identity=27.3584905660377, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=247, Percent_Identity=27.5303643724696, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=196, Percent_Identity=27.5510204081633, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=191, Percent_Identity=35.0785340314136, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=204, Percent_Identity=25.9803921568627, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=204, Percent_Identity=25.9803921568627, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=29.4416243654822, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=198, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=31.0880829015544, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=31.9371727748691, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=35.4166666666667, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=35.0515463917526, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641232, Length=198, Percent_Identity=31.8181818181818, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=28.3422459893048, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=32.4742268041237, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281364892, Length=170, Percent_Identity=32.9411764705882, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=31.9796954314721, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24641388, Length=215, Percent_Identity=29.3023255813954, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=30.4123711340206, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=228, Percent_Identity=27.6315789473684, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=29.1005291005291, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=29.6482412060301, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21356301, Length=182, Percent_Identity=29.1208791208791, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648944, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24643142, Length=176, Percent_Identity=27.8409090909091, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580925, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=29.1005291005291, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17737361, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364494, Length=196, Percent_Identity=29.5918367346939, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648693, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30263; Mature: 30263

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKQTTFKRVWFITGASRGLGALIARAALDDGNAVVATGRNADVVRERLGDHPGLLALA
CCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEE
LDVTVETQAQAAIEAAVRRFGRIDVLINNAGHGLLGAVEESSDADTRRMYETNVFGLLNV
EEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
TRAVLPVMRAQRAGHLINFSSIGGYSSAVGFGVYCSTKFAVEGLSEALHAELAPLGVAVT
HHHHHHHHHHHHCCCEEEECCCCCCHHHHCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE
VVEPGYFRTDFLDSTSLVVAPQVIPDYAATAGQVREGAKQLNHKQPGDPVRLAQAMLRLV
EECCCCEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DAERPPLRLALGSDTLRAIAEKNARVDAETAEWAELSRSTDFPG
CCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNTKQTTFKRVWFITGASRGLGALIARAALDDGNAVVATGRNADVVRERLGDHPGLLALA
CCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEE
LDVTVETQAQAAIEAAVRRFGRIDVLINNAGHGLLGAVEESSDADTRRMYETNVFGLLNV
EEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
TRAVLPVMRAQRAGHLINFSSIGGYSSAVGFGVYCSTKFAVEGLSEALHAELAPLGVAVT
HHHHHHHHHHHHCCCEEEECCCCCCHHHHCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE
VVEPGYFRTDFLDSTSLVVAPQVIPDYAATAGQVREGAKQLNHKQPGDPVRLAQAMLRLV
EECCCCEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DAERPPLRLALGSDTLRAIAEKNARVDAETAEWAELSRSTDFPG
CCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]