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The map label for this gene is ycfD [C]

Identifier: 119871363

GI number: 119871363

Start: 5574724

End: 5575938

Strand: Direct

Name: ycfD [C]

Synonym: Mkms_5339

Alternate gene names: 119871363

Gene position: 5574724-5575938 (Clockwise)

Preceding gene: 119871362

Following gene: 119871364

Centisome position: 97.17

GC content: 71.28

Gene sequence:

>1215_bases
ATGCTGAGCCGCTGCATCGCCACCGACCCGCACACGTTCGCCACCGAATACTGGGGTCGCCGACCGCTGCTCAGCCGTTC
CGGTGCGCTGCCCCGCGATTTCGCCGACCTGCTCTCGCCCGGGATGGTCGACGAGTTGATCGCCGAACGCGGGGTACGCG
CACCGTTCATCCGGCTCGCCAAAGAGGGTGACGTCCTCGCCAAGGACTGCTATCTCGGGCCCGCCGGCTTCGGCGCCGAG
ATGCCCGACCAGGTGGACTCCGCCAAGGTGCTCACCCAGTTTTCCGCCGGCGCCACCATCGTGCTGCAGGGTCTACACCG
GCTCTGGCCCCCGGTCATCGACCTCGTCCGCCACCTGGTCGACGACCTCGGCCATCCGGTGCAGGCCAACGCCTACATCA
CGCCCCCTAGCAACCGGGGCTTCGACCCGCACTACGACGTCCATGACGTCTTCTTGCTGCAGACGGCCGGCGAGAAGCGC
TGGGTCGTCCACGAACCCGTCCATCCGCACCCGCTGCCGTCGCAACCGTGGACGCAGCACCGTGACGCTATCGCCGAACG
CGCCGCCGGTGAACCGGTCATCGACACCGTGCTCGCCCCCGGCGACGCGCTGTATCTGCCGCGCGGGTGGGTGCATTCGG
CGCACGCCCTGGACACGACGTCGATCCACCTGACCATCGGCGTCTCTGCGGTGACGGGTGTCGACGTGGCCCGCGCCGTC
GTCGACGCGCTGGCGGACAGCGCCGCGTTCCGGGCGCCCCTGCCCATGGGCGGCGATCCCGCCGACCGGGATGAGATCAT
CGCGGCGGTGACCAAGGTGATGGCACAGATGGTCGAGACCATGCGCGACGATGCGACCGCGCTCAGCGGTGCGGCCGCCG
ACCGGTTGACCCGCACGCACGCCTCCCGGACGCGTCCGGTCGCCGTCCGCCCGCTGGCCACGCTCGACGCGGCCGCACAC
GCCGACACCACGACGGTGCAGTGGCGTCACGGACTCGTCGCGACGGCCGACACCGCCGGTGACCGGATCGAGCTGCGGTT
GACCGACCGGGTCCTCTCCTTCCCCGCCTCGTGTGCGCCGGCGGTGCTTGCGCTGCAACGCGGTCTGGCCGCCGATGCGG
GCAGCCTGCCCGGACTCGACCGGGCCGACGGCACCGTGCTCATTCGCAGACTGCTGCGCGAGGCGGTCGTGACGCCGGTG
CCGGCCACCGCATGA

Upstream 100 bases:

>100_bases
GGCCGACGGCACCGCTGACGCGGGCGAGGGAACCGCCGACGGCGGTTCGAACCCCGAAGGCCACGACGGCGGAGCCGACG
GCACCGCCTGACCGACCGAC

Downstream 100 bases:

>100_bases
CGCTACGGAAGCGCGCACCGTGCAGTGACCAGTCGCTGCTGCGCCGCGACCCGATGTACGGCACCGCGTCGGCGGGGTCC
TCGTGGGTGCTGCTCGAATT

Product: cupin 4 family protein

Products: NA

Alternate protein names: Cupin Superfamily Protein; LOW QUALITY PROTEIN Cupin 4 Family Protein; Transcription Factor Jumonji JmjC; Transcription Factor Jumonji JmjC Domain-Containing Protein

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLSRCIATDPHTFATEYWGRRPLLSRSGALPRDFADLLSPGMVDELIAERGVRAPFIRLAKEGDVLAKDCYLGPAGFGAE
MPDQVDSAKVLTQFSAGATIVLQGLHRLWPPVIDLVRHLVDDLGHPVQANAYITPPSNRGFDPHYDVHDVFLLQTAGEKR
WVVHEPVHPHPLPSQPWTQHRDAIAERAAGEPVIDTVLAPGDALYLPRGWVHSAHALDTTSIHLTIGVSAVTGVDVARAV
VDALADSAAFRAPLPMGGDPADRDEIIAAVTKVMAQMVETMRDDATALSGAAADRLTRTHASRTRPVAVRPLATLDAAAH
ADTTTVQWRHGLVATADTAGDRIELRLTDRVLSFPASCAPAVLALQRGLAADAGSLPGLDRADGTVLIRRLLREAVVTPV
PATA

Sequences:

>Translated_404_residues
MLSRCIATDPHTFATEYWGRRPLLSRSGALPRDFADLLSPGMVDELIAERGVRAPFIRLAKEGDVLAKDCYLGPAGFGAE
MPDQVDSAKVLTQFSAGATIVLQGLHRLWPPVIDLVRHLVDDLGHPVQANAYITPPSNRGFDPHYDVHDVFLLQTAGEKR
WVVHEPVHPHPLPSQPWTQHRDAIAERAAGEPVIDTVLAPGDALYLPRGWVHSAHALDTTSIHLTIGVSAVTGVDVARAV
VDALADSAAFRAPLPMGGDPADRDEIIAAVTKVMAQMVETMRDDATALSGAAADRLTRTHASRTRPVAVRPLATLDAAAH
ADTTTVQWRHGLVATADTAGDRIELRLTDRVLSFPASCAPAVLALQRGLAADAGSLPGLDRADGTVLIRRLLREAVVTPV
PATA
>Mature_404_residues
MLSRCIATDPHTFATEYWGRRPLLSRSGALPRDFADLLSPGMVDELIAERGVRAPFIRLAKEGDVLAKDCYLGPAGFGAE
MPDQVDSAKVLTQFSAGATIVLQGLHRLWPPVIDLVRHLVDDLGHPVQANAYITPPSNRGFDPHYDVHDVFLLQTAGEKR
WVVHEPVHPHPLPSQPWTQHRDAIAERAAGEPVIDTVLAPGDALYLPRGWVHSAHALDTTSIHLTIGVSAVTGVDVARAV
VDALADSAAFRAPLPMGGDPADRDEIIAAVTKVMAQMVETMRDDATALSGAAADRLTRTHASRTRPVAVRPLATLDAAAH
ADTTTVQWRHGLVATADTAGDRIELRLTDRVLSFPASCAPAVLALQRGLAADAGSLPGLDRADGTVLIRRLLREAVVTPV
PATA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI106879206, Length=172, Percent_Identity=34.8837209302326, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI110227621, Length=215, Percent_Identity=31.1627906976744, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI110227619, Length=215, Percent_Identity=31.1627906976744, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI23346418, Length=215, Percent_Identity=31.1627906976744, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71991759, Length=163, Percent_Identity=28.8343558282209, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18858091, Length=360, Percent_Identity=25.5555555555556, Blast_Score=93, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43198; Mature: 43198

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRCIATDPHTFATEYWGRRPLLSRSGALPRDFADLLSPGMVDELIAERGVRAPFIRLA
CCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
KEGDVLAKDCYLGPAGFGAEMPDQVDSAKVLTQFSAGATIVLQGLHRLWPPVIDLVRHLV
CCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHH
DDLGHPVQANAYITPPSNRGFDPHYDVHDVFLLQTAGEKRWVVHEPVHPHPLPSQPWTQH
HHCCCCEECCEEECCCCCCCCCCCCCHHEEEEEEECCCCCEEEECCCCCCCCCCCCHHHH
RDAIAERAAGEPVIDTVLAPGDALYLPRGWVHSAHALDTTSIHLTIGVSAVTGVDVARAV
HHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHH
VDALADSAAFRAPLPMGGDPADRDEIIAAVTKVMAQMVETMRDDATALSGAAADRLTRTH
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRTRPVAVRPLATLDAAAHADTTTVQWRHGLVATADTAGDRIELRLTDRVLSFPASCAP
HCCCCCEEECCHHHHHHHHCCCCCEEEECCCEEEEECCCCCEEEEEEHHHHHHCCCHHHH
AVLALQRGLAADAGSLPGLDRADGTVLIRRLLREAVVTPVPATA
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLSRCIATDPHTFATEYWGRRPLLSRSGALPRDFADLLSPGMVDELIAERGVRAPFIRLA
CCCCCCCCCCCHHHHHHCCCCCCHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
KEGDVLAKDCYLGPAGFGAEMPDQVDSAKVLTQFSAGATIVLQGLHRLWPPVIDLVRHLV
CCCCEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHH
DDLGHPVQANAYITPPSNRGFDPHYDVHDVFLLQTAGEKRWVVHEPVHPHPLPSQPWTQH
HHCCCCEECCEEECCCCCCCCCCCCCHHEEEEEEECCCCCEEEECCCCCCCCCCCCHHHH
RDAIAERAAGEPVIDTVLAPGDALYLPRGWVHSAHALDTTSIHLTIGVSAVTGVDVARAV
HHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHH
VDALADSAAFRAPLPMGGDPADRDEIIAAVTKVMAQMVETMRDDATALSGAAADRLTRTH
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRTRPVAVRPLATLDAAAHADTTTVQWRHGLVATADTAGDRIELRLTDRVLSFPASCAP
HCCCCCEEECCHHHHHHHHCCCCCEEEECCCEEEEECCCCCEEEEEEHHHHHHCCCHHHH
AVLALQRGLAADAGSLPGLDRADGTVLIRRLLREAVVTPVPATA
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA