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The map label for this gene is ydeL [H]

Identifier: 119871113

GI number: 119871113

Start: 5321038

End: 5322396

Strand: Direct

Name: ydeL [H]

Synonym: Mkms_5086

Alternate gene names: 119871113

Gene position: 5321038-5322396 (Clockwise)

Preceding gene: 119871110

Following gene: 119871114

Centisome position: 92.75

GC content: 73.44

Gene sequence:

>1359_bases
GTGATCCGTCCCGGCGCCCGCGGAGTGCGCGAACTGCTGGTCAACGCGCTGCGCGAGGCCGTGCGCTCGGGGCGGCTCGC
GGCGGGCACCGTGCTGCCGCCGTCGCGCACACTCGCGGCCGACCTCGGCATCGCCCGCAACACGGTCGCCGAGTCGTACG
CCGAACTCGTCGCCGAGGGCTGGCTCGCGTCACGGCAGGGCGCGGGCACCTGGGTGGTCAACTCCCAGGCGGGCCATCAG
ATCGCCCGGCCCCGGCGAGTGCGCTCGACGGCGCGACACAACCTGATGCCCGGCTCCCCCGACGTGTCGGAGTTCCCTCG
CAGCGCCTGGCTCGCCTCCGCCCGCCGCGCGCTGACCAACGCCCCCAGCGAGGCGTTCTGGATGGGCGATCCGCGCGGCC
GACCGGAGCTTCGCGAGGCACTCGCCGACTACCTCGCACGGGTGCGCGGCGTCCGCACCTCACCGGAGACAATCGTGATC
TGCGCCGGGGTCCGGCACGCGGTGGAGCTGCTCACCCGGGCCCTCGGGGCGCAGCGCCCGATCGCCGTCGAGGCCTACGG
CCTGTTCATCTTCCGCGACGCGATCCGCGCGCTCGGGGGGTCGACGGTGCCAATCGGCCTCGACGGCCACGGTGCGGTGA
TCGGCGACCTCGACGGACATGACGTGCCCGCGGTCCTCCTCACACCGGCCCACCACAATCCGCACGGTATGCCGCTGCAC
CCCACCCGCCGCACCGCCGCGGTGGAGTGGGCCCAGCGTCGCGGCGCCTATGTCCTCGAGGACGACTACGACGGCGAGTT
CCGCTACGACCGTCAACCCGTCGGCGCGATGCAGAGCCTGGACCCCGAACGGGTGGTGTACCTGGGCTCGGCCAGCAAGA
GCCTCGCCCCCGCGTTGCGGCTGGGATGGATGGCGCTGCCCGACGCCCTCGTCGAACCCGTCCTGGCCGCCGCGGGTGGC
AACCAGTTCTTCGTCGACGCACTCGCCCAACTGACCATGGCCGACTTCATCACCGCCGGCCATTACGACCGCCACATCCG
CCGGATGCGGATGCGCTACCGGCGGCGGCGCGACCGGCTCGTCGACGCACTCGCCCCGTTCGACGTCGAAATCCGCGGTC
TGGCAGCGGGACTCAACGCGCTGCTGACGCTGCCCGACGGCGCCGAACGCGAGGTGCTGCAGCGGGCGGGCAATGCGGGG
ATCGCGCTGGTGGGCCTGTCCGCGATGCGACATCCGGCGGCCGGACCGGCCGTCGCGGACCCCGACGGTGTGATCGTCGG
CTTCGGCGCACCGGCCGATCACGCCTTCGCCGCGGCGGTCGAAGCGCTGTGCGACGTCCTGGAGGCCACGCTGCGCTGA

Upstream 100 bases:

>100_bases
TCGAACGCTAGCCTCGAAACGCCCACGTAGATGGTTCAATTCAGGGGTGACTTCGTGGGCCAATCCGGGTACGCGCGACC
TACACCTCGACCTGCGCGAG

Downstream 100 bases:

>100_bases
GCGCACAGGAGCATAAGCTTCCGGGGTGGCCGAGCCCCCCATGTCGCCCCAACTGTCGTTGACCACGCAGATCTGGCGGT
TCCTGCTCACCGGCGGCTTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MIRPGARGVRELLVNALREAVRSGRLAAGTVLPPSRTLAADLGIARNTVAESYAELVAEGWLASRQGAGTWVVNSQAGHQ
IARPRRVRSTARHNLMPGSPDVSEFPRSAWLASARRALTNAPSEAFWMGDPRGRPELREALADYLARVRGVRTSPETIVI
CAGVRHAVELLTRALGAQRPIAVEAYGLFIFRDAIRALGGSTVPIGLDGHGAVIGDLDGHDVPAVLLTPAHHNPHGMPLH
PTRRTAAVEWAQRRGAYVLEDDYDGEFRYDRQPVGAMQSLDPERVVYLGSASKSLAPALRLGWMALPDALVEPVLAAAGG
NQFFVDALAQLTMADFITAGHYDRHIRRMRMRYRRRRDRLVDALAPFDVEIRGLAAGLNALLTLPDGAEREVLQRAGNAG
IALVGLSAMRHPAAGPAVADPDGVIVGFGAPADHAFAAAVEALCDVLEATLR

Sequences:

>Translated_452_residues
MIRPGARGVRELLVNALREAVRSGRLAAGTVLPPSRTLAADLGIARNTVAESYAELVAEGWLASRQGAGTWVVNSQAGHQ
IARPRRVRSTARHNLMPGSPDVSEFPRSAWLASARRALTNAPSEAFWMGDPRGRPELREALADYLARVRGVRTSPETIVI
CAGVRHAVELLTRALGAQRPIAVEAYGLFIFRDAIRALGGSTVPIGLDGHGAVIGDLDGHDVPAVLLTPAHHNPHGMPLH
PTRRTAAVEWAQRRGAYVLEDDYDGEFRYDRQPVGAMQSLDPERVVYLGSASKSLAPALRLGWMALPDALVEPVLAAAGG
NQFFVDALAQLTMADFITAGHYDRHIRRMRMRYRRRRDRLVDALAPFDVEIRGLAAGLNALLTLPDGAEREVLQRAGNAG
IALVGLSAMRHPAAGPAVADPDGVIVGFGAPADHAFAAAVEALCDVLEATLR
>Mature_452_residues
MIRPGARGVRELLVNALREAVRSGRLAAGTVLPPSRTLAADLGIARNTVAESYAELVAEGWLASRQGAGTWVVNSQAGHQ
IARPRRVRSTARHNLMPGSPDVSEFPRSAWLASARRALTNAPSEAFWMGDPRGRPELREALADYLARVRGVRTSPETIVI
CAGVRHAVELLTRALGAQRPIAVEAYGLFIFRDAIRALGGSTVPIGLDGHGAVIGDLDGHDVPAVLLTPAHHNPHGMPLH
PTRRTAAVEWAQRRGAYVLEDDYDGEFRYDRQPVGAMQSLDPERVVYLGSASKSLAPALRLGWMALPDALVEPVLAAAGG
NQFFVDALAQLTMADFITAGHYDRHIRRMRMRYRRRRDRLVDALAPFDVEIRGLAAGLNALLTLPDGAEREVLQRAGNAG
IALVGLSAMRHPAAGPAVADPDGVIVGFGAPADHAFAAAVEALCDVLEATLR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=410, Percent_Identity=27.8048780487805, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790797, Length=372, Percent_Identity=24.7311827956989, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48499; Mature: 48499

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50949 HTH_GNTR ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPGARGVRELLVNALREAVRSGRLAAGTVLPPSRTLAADLGIARNTVAESYAELVAEG
CCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
WLASRQGAGTWVVNSQAGHQIARPRRVRSTARHNLMPGSPDVSEFPRSAWLASARRALTN
HHHCCCCCCEEEEECCCCCHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
APSEAFWMGDPRGRPELREALADYLARVRGVRTSPETIVICAGVRHAVELLTRALGAQRP
CCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCC
IAVEAYGLFIFRDAIRALGGSTVPIGLDGHGAVIGDLDGHDVPAVLLTPAHHNPHGMPLH
EEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCCCCC
PTRRTAAVEWAQRRGAYVLEDDYDGEFRYDRQPVGAMQSLDPERVVYLGSASKSLAPALR
CCHHHHHHHHHHHCCCEEEECCCCCCEEECCCCHHHHHCCCCCCEEEECCCCHHHHHHHH
LGWMALPDALVEPVLAAAGGNQFFVDALAQLTMADFITAGHYDRHIRRMRMRYRRRRDRL
HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
VDALAPFDVEIRGLAAGLNALLTLPDGAEREVLQRAGNAGIALVGLSAMRHPAAGPAVAD
HHHHCCCCEEHHHHHHCCHHEEECCCCHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCC
PDGVIVGFGAPADHAFAAAVEALCDVLEATLR
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRPGARGVRELLVNALREAVRSGRLAAGTVLPPSRTLAADLGIARNTVAESYAELVAEG
CCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
WLASRQGAGTWVVNSQAGHQIARPRRVRSTARHNLMPGSPDVSEFPRSAWLASARRALTN
HHHCCCCCCEEEEECCCCCHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
APSEAFWMGDPRGRPELREALADYLARVRGVRTSPETIVICAGVRHAVELLTRALGAQRP
CCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCC
IAVEAYGLFIFRDAIRALGGSTVPIGLDGHGAVIGDLDGHDVPAVLLTPAHHNPHGMPLH
EEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCCCCC
PTRRTAAVEWAQRRGAYVLEDDYDGEFRYDRQPVGAMQSLDPERVVYLGSASKSLAPALR
CCHHHHHHHHHHHCCCEEEECCCCCCEEECCCCHHHHHCCCCCCEEEECCCCHHHHHHHH
LGWMALPDALVEPVLAAAGGNQFFVDALAQLTMADFITAGHYDRHIRRMRMRYRRRRDRL
HHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
VDALAPFDVEIRGLAAGLNALLTLPDGAEREVLQRAGNAGIALVGLSAMRHPAAGPAVAD
HHHHCCCCEEHHHHHHCCHHEEECCCCHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCC
PDGVIVGFGAPADHAFAAAVEALCDVLEATLR
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]