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The map label for this gene is rfbD [H]

Identifier: 119871108

GI number: 119871108

Start: 5316723

End: 5317553

Strand: Direct

Name: rfbD [H]

Synonym: Mkms_5081

Alternate gene names: 119871108

Gene position: 5316723-5317553 (Clockwise)

Preceding gene: 119871107

Following gene: 119871109

Centisome position: 92.67

GC content: 63.78

Gene sequence:

>831_bases
ATGAGTTTCGATGAGGCGTCCGCGCAGTCGAAGACGATGGCGCGCGCGTGGCGTGACCTCCGAGAGGGTTTCGGCAAACG
CGAGCTGTGGCTGCACCTCGGGTGGCAGGACATCAAACAGCGCTACCGCCGGTCGGTGCTCGGCCCGTTCTGGATCACCA
TCGCCACCGGCGCCACCGCGGTCGCGATGGGGCTGCTGTATTCGAAGCTGTTCAAACTCGAGCTGTCCGAACACCTTCCG
TACGTGACGATGGGCTTGATCGTCTGGAACCTCATCAACGCGTCGATCCTCGAGGGCGCCGAGGTGTTCATCGCCAACGA
AGGCCTGATCAAACAGCTGCCGACGCCGCTGTCGGTGCACGTCTACCGGCTGGTGTGGCGGCAGATGATCCTGTTCGCGC
ACAACATCATCATCTTCGTCGTCATCGCGATCATCTATCCGAAGCCGTGGCACTGGACCGATCTCGCGGTGTTCCCGGCG
CTGGCGCTGATCATGCTCAACTGCGTGTGGGTTTCGCTGTGCTTCGGCATCCTGGCGACCCGGTACCGGGACATCGGACC
GCTCCTCAACAGCATCGTGCAGCTGCTGTTCTTCATGACGCCGATCATCTGGAACGAGGCCACGCTGCAGGCTCAGGGCG
CCGGGCAGTGGGCCAAGATCGTCGAGCTCAACCCGCTGCTGCACTACCTCGACATCGTGCGGGCGCCCCTGCTGGGCGCC
GACCAGGAGGTGCGGCACTGGATCGTGGTGCTCGTGCTGACGGTGATCGGGTGGACGTTCGCGGCATTCGCGATGAAGCA
GTACCGGGCGCGGGTGCCGTACTGGGTCTGA

Upstream 100 bases:

>100_bases
GCTGGTACTTCCTGGTGTCCCGGCGCGACCCCGCCGGGCTGCGCGAGTGGATCCGGTTGCGCCGTCTTGGTCGTGAGGAG
AGGTTCGGGAGGCCGGGCAC

Downstream 100 bases:

>100_bases
TCGACCGGCGGTCGAGTGTGCGGGTTCGCCAGTGGGTGGTACCCGCGCTACGAACGCTCCCGGCATGTGCGCGAACTGCG
TGCTATCGCAATATTTGAAA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSFDEASAQSKTMARAWRDLREGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIATGATAVAMGLLYSKLFKLELSEHLP
YVTMGLIVWNLINASILEGAEVFIANEGLIKQLPTPLSVHVYRLVWRQMILFAHNIIIFVVIAIIYPKPWHWTDLAVFPA
LALIMLNCVWVSLCFGILATRYRDIGPLLNSIVQLLFFMTPIIWNEATLQAQGAGQWAKIVELNPLLHYLDIVRAPLLGA
DQEVRHWIVVLVLTVIGWTFAAFAMKQYRARVPYWV

Sequences:

>Translated_276_residues
MSFDEASAQSKTMARAWRDLREGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIATGATAVAMGLLYSKLFKLELSEHLP
YVTMGLIVWNLINASILEGAEVFIANEGLIKQLPTPLSVHVYRLVWRQMILFAHNIIIFVVIAIIYPKPWHWTDLAVFPA
LALIMLNCVWVSLCFGILATRYRDIGPLLNSIVQLLFFMTPIIWNEATLQAQGAGQWAKIVELNPLLHYLDIVRAPLLGA
DQEVRHWIVVLVLTVIGWTFAAFAMKQYRARVPYWV
>Mature_275_residues
SFDEASAQSKTMARAWRDLREGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIATGATAVAMGLLYSKLFKLELSEHLPY
VTMGLIVWNLINASILEGAEVFIANEGLIKQLPTPLSVHVYRLVWRQMILFAHNIIIFVVIAIIYPKPWHWTDLAVFPAL
ALIMLNCVWVSLCFGILATRYRDIGPLLNSIVQLLFFMTPIIWNEATLQAQGAGQWAKIVELNPLLHYLDIVRAPLLGAD
QEVRHWIVVLVLTVIGWTFAAFAMKQYRARVPYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31701; Mature: 31570

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDEASAQSKTMARAWRDLREGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIATGATA
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEECCHHHHHHHHHHHHCCHHHHHHHCCHHH
VAMGLLYSKLFKLELSEHLPYVTMGLIVWNLINASILEGAEVFIANEGLIKQLPTPLSVH
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHH
VYRLVWRQMILFAHNIIIFVVIAIIYPKPWHWTDLAVFPALALIMLNCVWVSLCFGILAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYRDIGPLLNSIVQLLFFMTPIIWNEATLQAQGAGQWAKIVELNPLLHYLDIVRAPLLGA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
DQEVRHWIVVLVLTVIGWTFAAFAMKQYRARVPYWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFDEASAQSKTMARAWRDLREGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIATGATA
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHEECCHHHHHHHHHHHHCCHHHHHHHCCHHH
VAMGLLYSKLFKLELSEHLPYVTMGLIVWNLINASILEGAEVFIANEGLIKQLPTPLSVH
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHH
VYRLVWRQMILFAHNIIIFVVIAIIYPKPWHWTDLAVFPALALIMLNCVWVSLCFGILAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYRDIGPLLNSIVQLLFFMTPIIWNEATLQAQGAGQWAKIVELNPLLHYLDIVRAPLLGA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
DQEVRHWIVVLVLTVIGWTFAAFAMKQYRARVPYWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]