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The map label for this gene is ycdM [C]

Identifier: 119870754

GI number: 119870754

Start: 4949622

End: 4950503

Strand: Direct

Name: ycdM [C]

Synonym: Mkms_4725

Alternate gene names: 119870754

Gene position: 4949622-4950503 (Clockwise)

Preceding gene: 119870753

Following gene: 119870755

Centisome position: 86.27

GC content: 64.63

Gene sequence:

>882_bases
ATGAAGTACACGGTCAGCATCGCGATGGGTCCCGTCGACGAGTTGACCGAGCTCGCGAGATGCGCCGAAGAGGTCGGGTT
CGACGCTATCGCGCTGCCGGATTCGCTGTTCTACATGGAGAAGCAGGCGGCGGACTACCCCTACACCCCCGACGGGTCGC
GGATGTGGAACGCCGACACGCCGTGGGTGGACCCCCTGATCGCGGCCGCGGCGATGGGTGCGGTGACCTCGACACTGCGG
TTCTACACCAACGTGATGAAGCTCGGATCGCGCAATCCCCTGCTGCTGGCCCGGCAGGTCGGCTCGGTTGCGAACCTGAC
ACACAACCGGTTCGGCTTCGGCGTCGGAATCGGTTGGGCGCCAGAGGAGTTCGAGTGGTGCGGGGTGCCGTTCGCGCGGC
GCGGCAAGCGGGTCGACGAGATGATCGAGATCCTCAAGCTGGTGCTCGCCGGCGGTATGGTCGAGTTCCACGGCGAGTTC
TTCGACTTCGACCGGTTGCAGATGAGCCCGGCGCCGTCCGAACCGGTTCCGTTCTACGTGGGCGGCCACACCGACGTTGC
TCTCAAACGGGCGGCGCGGGTGGGTGACGGCTGGACCAGCGCGATGATGACCGGCGAACAACTCGCCGAGACGATCCGCA
AGCTCAACGACCTACGTGCCGAATTCGGCCGCGAGGCTGAGCCATTCGAGTTCCAGGCGGTGTGCATCGACAAGTTCGGC
GTCGACGGCCACCGCGAACTCGCCGAGGCGGGCGTCACCGACAACATCGTCATCCCATGGGTCTTTGACGGCTTGAGTTT
CGACGCGCCGCTGGAGAAGAAGAAGGATTCGATGAAGCGGTTCGCCGACACCTACATCCACTCGGGGTGGCAGAAGTACT
GA

Upstream 100 bases:

>100_bases
TGGAGGGCGCCCGCAAAGCCCTCGGACATGCGTACGGCGGTGGCTCGCAGTACTACTCGATGTGGGTGGTGAGCTCCGAC
AAGCGGACGCAGCCGTGACC

Downstream 100 bases:

>100_bases
CCGCGGCGGCGGCGTACGTTGGGGGTGAACAGCCACCCACCACCGGAGGCGAACTCACGTGTTCCCAGCCCACCGGCAGA
CGACAGTGAAGTCGGTGGCC

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKYTVSIAMGPVDELTELARCAEEVGFDAIALPDSLFYMEKQAADYPYTPDGSRMWNADTPWVDPLIAAAAMGAVTSTLR
FYTNVMKLGSRNPLLLARQVGSVANLTHNRFGFGVGIGWAPEEFEWCGVPFARRGKRVDEMIEILKLVLAGGMVEFHGEF
FDFDRLQMSPAPSEPVPFYVGGHTDVALKRAARVGDGWTSAMMTGEQLAETIRKLNDLRAEFGREAEPFEFQAVCIDKFG
VDGHRELAEAGVTDNIVIPWVFDGLSFDAPLEKKKDSMKRFADTYIHSGWQKY

Sequences:

>Translated_293_residues
MKYTVSIAMGPVDELTELARCAEEVGFDAIALPDSLFYMEKQAADYPYTPDGSRMWNADTPWVDPLIAAAAMGAVTSTLR
FYTNVMKLGSRNPLLLARQVGSVANLTHNRFGFGVGIGWAPEEFEWCGVPFARRGKRVDEMIEILKLVLAGGMVEFHGEF
FDFDRLQMSPAPSEPVPFYVGGHTDVALKRAARVGDGWTSAMMTGEQLAETIRKLNDLRAEFGREAEPFEFQAVCIDKFG
VDGHRELAEAGVTDNIVIPWVFDGLSFDAPLEKKKDSMKRFADTYIHSGWQKY
>Mature_293_residues
MKYTVSIAMGPVDELTELARCAEEVGFDAIALPDSLFYMEKQAADYPYTPDGSRMWNADTPWVDPLIAAAAMGAVTSTLR
FYTNVMKLGSRNPLLLARQVGSVANLTHNRFGFGVGIGWAPEEFEWCGVPFARRGKRVDEMIEILKLVLAGGMVEFHGEF
FDFDRLQMSPAPSEPVPFYVGGHTDVALKRAARVGDGWTSAMMTGEQLAETIRKLNDLRAEFGREAEPFEFQAVCIDKFG
VDGHRELAEAGVTDNIVIPWVFDGLSFDAPLEKKKDSMKRFADTYIHSGWQKY

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787247, Length=177, Percent_Identity=25.4237288135593, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32641; Mature: 32641

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYTVSIAMGPVDELTELARCAEEVGFDAIALPDSLFYMEKQAADYPYTPDGSRMWNADT
CEEEEEEECCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCCEECCCCC
PWVDPLIAAAAMGAVTSTLRFYTNVMKLGSRNPLLLARQVGSVANLTHNRFGFGVGIGWA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCEEECCCCC
PEEFEWCGVPFARRGKRVDEMIEILKLVLAGGMVEFHGEFFDFDRLQMSPAPSEPVPFYV
CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHEECCCCCCCHHEECCCCCCCCCCEEE
GGHTDVALKRAARVGDGWTSAMMTGEQLAETIRKLNDLRAEFGREAEPFEFQAVCIDKFG
CCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
VDGHRELAEAGVTDNIVIPWVFDGLSFDAPLEKKKDSMKRFADTYIHSGWQKY
CCHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKYTVSIAMGPVDELTELARCAEEVGFDAIALPDSLFYMEKQAADYPYTPDGSRMWNADT
CEEEEEEECCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCCEECCCCC
PWVDPLIAAAAMGAVTSTLRFYTNVMKLGSRNPLLLARQVGSVANLTHNRFGFGVGIGWA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCEEECCCCC
PEEFEWCGVPFARRGKRVDEMIEILKLVLAGGMVEFHGEFFDFDRLQMSPAPSEPVPFYV
CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHEECCCCCCCHHEECCCCCCCCCCEEE
GGHTDVALKRAARVGDGWTSAMMTGEQLAETIRKLNDLRAEFGREAEPFEFQAVCIDKFG
CCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
VDGHRELAEAGVTDNIVIPWVFDGLSFDAPLEKKKDSMKRFADTYIHSGWQKY
CCHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]