BacMap

Definition	Mycobacterium sp. KMS chromosome, complete genome.
Accession	NC_008705
Length	5,737,227

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The map label for this gene is ybbO [C]

Identifier: 119870698

GI number: 119870698

Start: 4897001

End: 4897846

Strand: Direct

Name: ybbO [C]

Synonym: Mkms_4669

Alternate gene names: 119870698

Gene position: 4897001-4897846 (Clockwise)

Preceding gene: 119870697

Following gene: 119870699

Centisome position: 85.35

GC content: 67.85

Gene sequence:

>846_bases
ATGCCACGTTTCGAGCCCCTGCCCGACCGCCGACCAGCGCTGGTGGCCGGCGCCTCCTCCGGTATCGGCGCCGCGACGGC
GATCGAGCTTGCCGCCCACGGTTTTCCGGTCGCCCTCGGAGCCCGCCGGGTGGAGAAGTGCCAGGAGATCGTCGACACCA
TCCGCGCCGAAGGGGGCGAGGCCATCGCGGTCCATCTCGATGTCACCGACCCCGATTCGGTGAAAGCGGCCGTCGAGCAG
ACCACCTCAGAGCTCGGCGACATCGAGGTGCTGGTCGCCGGGGCCGGCGACACGTACTTCGGGAAGCTGGCCGACATCAG
CACCGAACAGTTCGAATCGCAGATACAGATCCACCTGATCGGCGCCAACCGGGTCGCCGGGGCCGTCCTGCCCGGCATGA
TCGAACGGCAACGCGGGGATTTGATCTTCGTCGGATCCGATGTGGCTCTGCGGCAGCGGCCGCACATGGGCGCCTACGGA
GCTGCCAAGGCTGCGCTCGTCGCGATGGTCACCAATTACCAGATGGAACTCGAAGGAACCGGCGTACGCGCCTCGATCGT
GCACCCCGGGCCGACGAAGACGTCGATGGGCTGGAGCCTGCCGGCCGAGCTGATCGGGCCGGCGCTCGAGGACTGGGCCA
AATGGGGCCAGGCGCGCCACGACTACTTCCTGCGCGCCGCCGACCTGGCCCGGGCCATCACCTTCGTCGCCGAAACCCCC
CGCGGCGGTTTCATCGCGAACATGGAGTTGCAGCCCGAAGCGCCGCTCGCGCACACCAAGGAACGTCAGCAACTGAAAGT
CGACGAGGAAGCCCTCTCCGGGGCGAGCGAAGCGACGAGAGAATAG

Upstream 100 bases:

>100_bases
ACGAGGTCGACGAGGCCAACGCCGTCCGCGTTCACTCGAGCAATGTCCGCGGGTTCGCCCATCTTCCGATCACCGTCCAG
ACCCGCTGAAGGACCGTCTG

Downstream 100 bases:

>100_bases
GAACCGCATGACCACCGCAGTTGTGCCCCGGGTCTCCGGCGGCGAAGAGGAACACGGCCACCTCGAGGAGTTCCGCACCG
ACCCGATCGGGTTGATGAAG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MPRFEPLPDRRPALVAGASSGIGAATAIELAAHGFPVALGARRVEKCQEIVDTIRAEGGEAIAVHLDVTDPDSVKAAVEQ
TTSELGDIEVLVAGAGDTYFGKLADISTEQFESQIQIHLIGANRVAGAVLPGMIERQRGDLIFVGSDVALRQRPHMGAYG
AAKAALVAMVTNYQMELEGTGVRASIVHPGPTKTSMGWSLPAELIGPALEDWAKWGQARHDYFLRAADLARAITFVAETP
RGGFIANMELQPEAPLAHTKERQQLKVDEEALSGASEATRE

Sequences:

>Translated_281_residues
MPRFEPLPDRRPALVAGASSGIGAATAIELAAHGFPVALGARRVEKCQEIVDTIRAEGGEAIAVHLDVTDPDSVKAAVEQ
TTSELGDIEVLVAGAGDTYFGKLADISTEQFESQIQIHLIGANRVAGAVLPGMIERQRGDLIFVGSDVALRQRPHMGAYG
AAKAALVAMVTNYQMELEGTGVRASIVHPGPTKTSMGWSLPAELIGPALEDWAKWGQARHDYFLRAADLARAITFVAETP
RGGFIANMELQPEAPLAHTKERQQLKVDEEALSGASEATRE
>Mature_280_residues
PRFEPLPDRRPALVAGASSGIGAATAIELAAHGFPVALGARRVEKCQEIVDTIRAEGGEAIAVHLDVTDPDSVKAAVEQT
TSELGDIEVLVAGAGDTYFGKLADISTEQFESQIQIHLIGANRVAGAVLPGMIERQRGDLIFVGSDVALRQRPHMGAYGA
AKAALVAMVTNYQMELEGTGVRASIVHPGPTKTSMGWSLPAELIGPALEDWAKWGQARHDYFLRAADLARAITFVAETPR
GGFIANMELQPEAPLAHTKERQQLKVDEEALSGASEATRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=30.4812834224599, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI40254992, Length=226, Percent_Identity=28.7610619469027, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI32483357, Length=197, Percent_Identity=27.9187817258883, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503817, Length=201, Percent_Identity=29.3532338308458, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=28.7179487179487, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI210032110, Length=213, Percent_Identity=25.8215962441315, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=31.0880829015544, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=24.8677248677249, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=272, Percent_Identity=23.5294117647059, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=26.984126984127, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI119392083, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI225579078, Length=203, Percent_Identity=26.1083743842365, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI146231950, Length=215, Percent_Identity=30.2325581395349, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=31.1827956989247, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787335, Length=191, Percent_Identity=32.9842931937173, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=32.4607329842932, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=31.6666666666667, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789378, Length=197, Percent_Identity=30.9644670050761, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790717, Length=220, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=192, Percent_Identity=29.6875, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=190, Percent_Identity=26.8421052631579, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=27.8048780487805, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=24.2105263157895, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=252, Percent_Identity=27.3809523809524, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=203, Percent_Identity=24.1379310344828, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=28.7128712871287, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=201, Percent_Identity=30.8457711442786, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=241, Percent_Identity=26.9709543568465, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324126, Length=197, Percent_Identity=27.4111675126904, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6320089, Length=223, Percent_Identity=26.457399103139, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=31.9796954314721, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28571387, Length=241, Percent_Identity=31.5352697095436, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641232, Length=242, Percent_Identity=28.9256198347107, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=35.7894736842105, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571526, Length=184, Percent_Identity=32.6086956521739, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24663911, Length=252, Percent_Identity=29.3650793650794, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24644339, Length=187, Percent_Identity=28.3422459893048, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=24.7011952191235, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640442, Length=208, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24651139, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17737361, Length=205, Percent_Identity=30.2439024390244, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=254, Percent_Identity=29.1338582677165, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580925, Length=188, Percent_Identity=26.063829787234, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=25.4054054054054, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=23.4042553191489, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29897; Mature: 29766

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFEPLPDRRPALVAGASSGIGAATAIELAAHGFPVALGARRVEKCQEIVDTIRAEGGE
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
AIAVHLDVTDPDSVKAAVEQTTSELGDIEVLVAGAGDTYFGKLADISTEQFESQIQIHLI
EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCHHHHCCEEEEEEE
GANRVAGAVLPGMIERQRGDLIFVGSDVALRQRPHMGAYGAAKAALVAMVTNYQMELEGT
ECCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECC
GVRASIVHPGPTKTSMGWSLPAELIGPALEDWAKWGQARHDYFLRAADLARAITFVAETP
CEEEEEECCCCCCCCCCCCCCHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECC
RGGFIANMELQPEAPLAHTKERQQLKVDEEALSGASEATRE
CCCEEEEEEECCCCCCCCCCHHHHHCCCHHHHCCCHHHCCC
>Mature Secondary Structure 
PRFEPLPDRRPALVAGASSGIGAATAIELAAHGFPVALGARRVEKCQEIVDTIRAEGGE
CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
AIAVHLDVTDPDSVKAAVEQTTSELGDIEVLVAGAGDTYFGKLADISTEQFESQIQIHLI
EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCHHHHCCEEEEEEE
GANRVAGAVLPGMIERQRGDLIFVGSDVALRQRPHMGAYGAAKAALVAMVTNYQMELEGT
ECCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECC
GVRASIVHPGPTKTSMGWSLPAELIGPALEDWAKWGQARHDYFLRAADLARAITFVAETP
CEEEEEECCCCCCCCCCCCCCHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECC
RGGFIANMELQPEAPLAHTKERQQLKVDEEALSGASEATRE
CCCEEEEEEECCCCCCCCCCHHHHHCCCHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905979; 11679669 [H]