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The map label for this gene is ypfJ [C]

Identifier: 119869960

GI number: 119869960

Start: 4134620

End: 4136065

Strand: Direct

Name: ypfJ [C]

Synonym: Mkms_3930

Alternate gene names: 119869960

Gene position: 4134620-4136065 (Clockwise)

Preceding gene: 119869959

Following gene: 119869964

Centisome position: 72.07

GC content: 70.54

Gene sequence:

>1446_bases
ATGAGCCGACGGCGGGTGTTCGGCGTCCAGGTCACCGCGGCGGCGGTGCTGGTGGTCGCCGGCTGCTCGACCACGCTGCA
GGGCCGTCCGGTATCGGTGTTCGACGACCCGTTCCGGGTGGCCGGCATGGTGGCCACCGACGGGCCGACGGGTCTGCGCC
CGGACGCCGAGGCCCCCGGCCGCGACGTCGTGGGCTCCGACGGCGGTGACATCGACGCGCTCGCCGCGGCGGCGGTCAGC
GACGTCGAGGAGTTCTGGACGCAGGCCTATCCGGAGACGTTCGCCGGTGAACAGTTCACCCCGATCGAGACGCTGATGTC
GTGGAACTCAAGCGAATTCGACGGGATGTTCTGCGGCATCGACACCATCGACCTGGTCAACGCCGGGTTCTGCCTCGAGG
AGAACACGATCGGGTGGGACCGTGGTGAACTCCTGCCCGCACTGCGGGCCGCGAACGGGGACATGGGTGTGGCGATGGTG
CTCGCCCACGAGTACGGGCACACGATCGTGCGCCAGGCCGAGCTCAACGATCCCGACACCCCGGTGCTGGTGCCCGAACA
GCAGGCGGACTGTTTCGCCGGGGCCTACATGCGCTGGGTGGCCGAGGGGTCGTCGCCGCGCTTCACCCTGAGCACCGCCG
ACGGTCTCAACGGTGTGTTGTCGGCCGTCATCGCGTTCCGCGACCCGTTGTTCAGCGAGGGCGATCTGTTCGCCGCGCTC
GACGAACACGGTTCGGCGTTCGAACGCGTCTCGGCCTTCCAGTTCGGCTTCACCGACGGCCCGTCGTCGTGTGCGGCGAT
CGACCTGCGCGAGATCGGCCAGCGGCGCGGCGATCTGCCGGTGCTGCTCGCCGAGGACCAGACCGGCGAACTGCCCGTCA
CCGCCGAGTCCGTGCGGTCGATCGTCGACGCGCTGACCATCACGTTCGAACCCGCCCGCCCGCCGCAACTCGACTTCGAC
GCCGACGCCGCGCAGACCTGCCCGGACGCGCGCCCGAGCCCGCCGGTGTCCTACTGCCCGGCCACCGGCAGGCTCGTCGT
CGACCTCGCCGAACTGCAGATCATGGGCGCCCCGCAGGAGGAGGTCGACACCAACGGGCTGGCGAACGGCGACAACACGG
CGTACTCGGTGCTGATGTCGCGGTATCTGCAGGCGGTGCAGCACGAGCAGGGTCTGGTGCTCGACACCGCCGAGGCGGCC
CTGCGCACGGCCTGCCTGACGGGGGTCGCCACCTCGTTGCTGTCGCGCGACGTCACCACCCCCGACGGGAGCACCATCGC
GCTGACGGCCGGCGACCTCGACGAGGCGGTGTCGGGCATCCTGACCAACGGGCTGGCCGCCAGCGATGTCAACGGCGATT
CGGTGCCGTCGGGGTTCTCCCGGATCGACGCCTTCCGGGTCGGGGTGCTCGGCGACGAACAGCGGTGCCTGACCCGCTTC
CCGTAG

Upstream 100 bases:

>100_bases
CACCACCGACCCGGCCCGGGTGCGCGCGGCGCTCGAACGCCTCCGCGCCGGGTCCTGACGTCACTATCCTTCGAACGAAG
TGACACGGAAAGGCGCCAGC

Downstream 100 bases:

>100_bases
GGGTCAGACAACCTTGGTGGTGCCGTACCACGCCAGCACCGCTTCGGACATCTCGGTCTCGTGGGTCAGGATGGCGTAGG
ACCGGATGAACGACTGCCCG

Product: protein LpqM

Products: NA

Alternate protein names: Metallopeptidase; Neutral Zinc Metallopeptidase; Aminopeptidase; LpqM Protein; Metalloprotease; Lipoprotein; Metalloprotease-Like Protein

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MSRRRVFGVQVTAAAVLVVAGCSTTLQGRPVSVFDDPFRVAGMVATDGPTGLRPDAEAPGRDVVGSDGGDIDALAAAAVS
DVEEFWTQAYPETFAGEQFTPIETLMSWNSSEFDGMFCGIDTIDLVNAGFCLEENTIGWDRGELLPALRAANGDMGVAMV
LAHEYGHTIVRQAELNDPDTPVLVPEQQADCFAGAYMRWVAEGSSPRFTLSTADGLNGVLSAVIAFRDPLFSEGDLFAAL
DEHGSAFERVSAFQFGFTDGPSSCAAIDLREIGQRRGDLPVLLAEDQTGELPVTAESVRSIVDALTITFEPARPPQLDFD
ADAAQTCPDARPSPPVSYCPATGRLVVDLAELQIMGAPQEEVDTNGLANGDNTAYSVLMSRYLQAVQHEQGLVLDTAEAA
LRTACLTGVATSLLSRDVTTPDGSTIALTAGDLDEAVSGILTNGLAASDVNGDSVPSGFSRIDAFRVGVLGDEQRCLTRF
P

Sequences:

>Translated_481_residues
MSRRRVFGVQVTAAAVLVVAGCSTTLQGRPVSVFDDPFRVAGMVATDGPTGLRPDAEAPGRDVVGSDGGDIDALAAAAVS
DVEEFWTQAYPETFAGEQFTPIETLMSWNSSEFDGMFCGIDTIDLVNAGFCLEENTIGWDRGELLPALRAANGDMGVAMV
LAHEYGHTIVRQAELNDPDTPVLVPEQQADCFAGAYMRWVAEGSSPRFTLSTADGLNGVLSAVIAFRDPLFSEGDLFAAL
DEHGSAFERVSAFQFGFTDGPSSCAAIDLREIGQRRGDLPVLLAEDQTGELPVTAESVRSIVDALTITFEPARPPQLDFD
ADAAQTCPDARPSPPVSYCPATGRLVVDLAELQIMGAPQEEVDTNGLANGDNTAYSVLMSRYLQAVQHEQGLVLDTAEAA
LRTACLTGVATSLLSRDVTTPDGSTIALTAGDLDEAVSGILTNGLAASDVNGDSVPSGFSRIDAFRVGVLGDEQRCLTRF
P
>Mature_480_residues
SRRRVFGVQVTAAAVLVVAGCSTTLQGRPVSVFDDPFRVAGMVATDGPTGLRPDAEAPGRDVVGSDGGDIDALAAAAVSD
VEEFWTQAYPETFAGEQFTPIETLMSWNSSEFDGMFCGIDTIDLVNAGFCLEENTIGWDRGELLPALRAANGDMGVAMVL
AHEYGHTIVRQAELNDPDTPVLVPEQQADCFAGAYMRWVAEGSSPRFTLSTADGLNGVLSAVIAFRDPLFSEGDLFAALD
EHGSAFERVSAFQFGFTDGPSSCAAIDLREIGQRRGDLPVLLAEDQTGELPVTAESVRSIVDALTITFEPARPPQLDFDA
DAAQTCPDARPSPPVSYCPATGRLVVDLAELQIMGAPQEEVDTNGLANGDNTAYSVLMSRYLQAVQHEQGLVLDTAEAAL
RTACLTGVATSLLSRDVTTPDGSTIALTAGDLDEAVSGILTNGLAASDVNGDSVPSGFSRIDAFRVGVLGDEQRCLTRFP

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50769; Mature: 50638

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRRVFGVQVTAAAVLVVAGCSTTLQGRPVSVFDDPFRVAGMVATDGPTGLRPDAEAPG
CCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCC
RDVVGSDGGDIDALAAAAVSDVEEFWTQAYPETFAGEQFTPIETLMSWNSSEFDGMFCGI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHCCCCCCCCEEEECC
DTIDLVNAGFCLEENTIGWDRGELLPALRAANGDMGVAMVLAHEYGHTIVRQAELNDPDT
CHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHCCCEEEECCCCCCCC
PVLVPEQQADCFAGAYMRWVAEGSSPRFTLSTADGLNGVLSAVIAFRDPLFSEGDLFAAL
CEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEH
DEHGSAFERVSAFQFGFTDGPSSCAAIDLREIGQRRGDLPVLLAEDQTGELPVTAESVRS
HHCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHH
IVDALTITFEPARPPQLDFDADAAQTCPDARPSPPVSYCPATGRLVVDLAELQIMGAPQE
HHHHHEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEHEEEECCCHH
EVDTNGLANGDNTAYSVLMSRYLQAVQHEQGLVLDTAEAALRTACLTGVATSLLSRDVTT
HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCC
PDGSTIALTAGDLDEAVSGILTNGLAASDVNGDSVPSGFSRIDAFRVGVLGDEQRCLTRF
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHEEEECCCCCHHHHCCC
P
C
>Mature Secondary Structure 
SRRRVFGVQVTAAAVLVVAGCSTTLQGRPVSVFDDPFRVAGMVATDGPTGLRPDAEAPG
CCCEEEEEEHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCC
RDVVGSDGGDIDALAAAAVSDVEEFWTQAYPETFAGEQFTPIETLMSWNSSEFDGMFCGI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHCCCCCCCCEEEECC
DTIDLVNAGFCLEENTIGWDRGELLPALRAANGDMGVAMVLAHEYGHTIVRQAELNDPDT
CHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHCCCEEEECCCCCCCC
PVLVPEQQADCFAGAYMRWVAEGSSPRFTLSTADGLNGVLSAVIAFRDPLFSEGDLFAAL
CEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEH
DEHGSAFERVSAFQFGFTDGPSSCAAIDLREIGQRRGDLPVLLAEDQTGELPVTAESVRS
HHCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHH
IVDALTITFEPARPPQLDFDADAAQTCPDARPSPPVSYCPATGRLVVDLAELQIMGAPQE
HHHHHEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEHEEEECCCHH
EVDTNGLANGDNTAYSVLMSRYLQAVQHEQGLVLDTAEAALRTACLTGVATSLLSRDVTT
HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCC
PDGSTIALTAGDLDEAVSGILTNGLAASDVNGDSVPSGFSRIDAFRVGVLGDEQRCLTRF
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHEEEECCCCCHHHHCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA