Click here to switch to the map view.

The map label for this gene is intR [C]

Identifier: 119868999

GI number: 119868999

Start: 3096902

End: 3098041

Strand: Direct

Name: intR [C]

Synonym: Mkms_2967

Alternate gene names: 119868999

Gene position: 3096902-3098041 (Clockwise)

Preceding gene: 119868998

Following gene: 119869000

Centisome position: 53.98

GC content: 65.61

Gene sequence:

>1140_bases
ATGAGAAAGCGCGCCAACGGCGAAGGCAATATCCGGCAGCGTGCGAACGGCCGCTGGGAGGGCCGGGTGTCGTATGTCGA
CCCGGTGACGGATGGGCGTAAGTCGGTGTCGGTGTATGCCGCCACCGCTGCGGAGTGTCGCAAGGAGTTGAAGAAGGTTC
GGGACCGTATCGAGGGTGGCGCGCCCGCCAAGGACGCGCCCAACACGGTTTCTTCATGGCTCAAGCAGTGGCGCGCGTCA
TCGCTGGCGGCATCGGACCGCAAGGAGACCACCAAGTCGTTGTACGCAACATTGTCGCGGAAGCACCTTGAGGGTGCGCG
TATCGGCGACAAGCGGCTGGACCGGTTAAAGCCGTCCGACGTCGAGCTGCTGATCGTGCAGTTGCGCGGCAAGAACCTGT
CCGACTCGACGGTGCGGCAGGTCTACACGGTTCTGCGCCAGGCGCTCGACGTGGCCGTGCGCGACGGCTTGCTGGCAGCC
AATCCAGCATCGAAGGTGAAGCGACCGGGTGTCGCACGCAAGGAGGCGAAGTATCTTCCCGCCGCCGACGTGGCGCGGCT
GCTTGATGCAGCGAAGGGGCTGCGCTACTACCTCGGCGTCGTGCTAATGGCGACGACGGGCCTACGTCGAGGTGAGGTTG
CGGGGCTGCTGTGGTCGGACGTCGACCTCGAGAAGGGTGAGTTGACGGTGCGGCACACGCTGTCGCGGGTCGACGGCAAA
TTGGTGTTGACCGAGCCCAAGACGGATCGGTCGCGGCGGCGAGTACCCCTGCACGCTGGGGTCGTCGCGCAACTCAAGAT
GCACCGCACGCAGCAGTTGCAGGAACGTCTCGCGGCGGGTGACCAGTGGCGTGATACGGGGGCGGTACTCGCCACCGAGT
TCGGCACGCTGCTGGACCCGCGCAACCTGCTGCGCACGGTCGAAATTGCAGCAGCGAAAGTGGGTATCGAGGACGTCGGT
GCGCACACCATGCGGCATAGCGCGGCGGTCGCGTGGCTGGAGTCCGGTGTGCATATTAAGGCGGCTGCAGACCTACTCGG
CCACTCGTCCATTGCCATTACCGGCGACCTGTACGGCCACACATCCGACGAGACGGCGCGGGCCGCTGTCGACGGTTTGG
GTACCGCGCTCGGGCTGTGA

Upstream 100 bases:

>100_bases
GCGAAGCGTTCGGCGTCAGACTACGGCAGGCCGGGAACATTGTTGCCGAGTGCCGCCGGCGCGGCTTCCTTCCCCCGACC
AAGCAGGGCAGGAAGAAGGC

Downstream 100 bases:

>100_bases
CCTGGTTTGGGTACACAGTTTGGGTAAGGCATAGAAAAGGCGGCTCCCGATTTCTCGGAAACCGCCTCTGACCTGCGTCG
GGCTGACAGGATTTGAACCT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRKSVSVYAATAAECRKELKKVRDRIEGGAPAKDAPNTVSSWLKQWRAS
SLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAA
NPASKVKRPGVARKEAKYLPAADVARLLDAAKGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSRVDGK
LVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIEDVG
AHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGDLYGHTSDETARAAVDGLGTALGL

Sequences:

>Translated_379_residues
MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRKSVSVYAATAAECRKELKKVRDRIEGGAPAKDAPNTVSSWLKQWRAS
SLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAA
NPASKVKRPGVARKEAKYLPAADVARLLDAAKGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSRVDGK
LVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIEDVG
AHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGDLYGHTSDETARAAVDGLGTALGL
>Mature_379_residues
MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRKSVSVYAATAAECRKELKKVRDRIEGGAPAKDAPNTVSSWLKQWRAS
SLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAA
NPASKVKRPGVARKEAKYLPAADVARLLDAAKGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSRVDGK
LVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIEDVG
AHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGDLYGHTSDETARAAVDGLGTALGL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=240, Percent_Identity=27.5, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41245; Mature: 41245

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRKSVSVYAATAAECRKELKKVRDRIEGG
CCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
APAKDAPNTVSSWLKQWRASSLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLKPSD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
VELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAANPASKVKRPGVARKEAKYLP
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCHHHHCCCC
AADVARLLDAAKGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSRVDGK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCE
LVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGTLLDP
EEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH
RNLLRTVEIAAAKVGIEDVGAHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGDLYGH
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCEEEEEEECCC
TSDETARAAVDGLGTALGL
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKRANGEGNIRQRANGRWEGRVSYVDPVTDGRKSVSVYAATAAECRKELKKVRDRIEGG
CCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
APAKDAPNTVSSWLKQWRASSLAASDRKETTKSLYATLSRKHLEGARIGDKRLDRLKPSD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
VELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAANPASKVKRPGVARKEAKYLP
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCHHHHCCCC
AADVARLLDAAKGLRYYLGVVLMATTGLRRGEVAGLLWSDVDLEKGELTVRHTLSRVDGK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCE
LVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQWRDTGAVLATEFGTLLDP
EEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH
RNLLRTVEIAAAKVGIEDVGAHTMRHSAAVAWLESGVHIKAAADLLGHSSIAITGDLYGH
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCEEEEEEECCC
TSDETARAAVDGLGTALGL
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]