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The map label for this gene is yddA [C]

Identifier: 119868929

GI number: 119868929

Start: 3036240

End: 3038252

Strand: Direct

Name: yddA [C]

Synonym: Mkms_2897

Alternate gene names: 119868929

Gene position: 3036240-3038252 (Clockwise)

Preceding gene: 119868928

Following gene: 119868930

Centisome position: 52.92

GC content: 68.26

Gene sequence:

>2013_bases
ATGTTCAGACCGTCGATCGACTGGGGTTCGGAACTTGCGAACTCGACTGTGTGGGTGCTCGGATGCTTCCTGATCACCGC
ACCGTGCCTTCTGCTCGTGCTGGCCGCCGTGGGGCGGTTCACCGAGTGGGGGCGTCAGTTCCGGCGCATCACCGGCCGGT
ACTTCACCGGCACGCAGAGCGTTCCGGTGTGGGCGGGGCTGGCGGCGCTGCTGCTCTCGTCGATCGTGTTGGTGCGGATC
AGCGTGCTGCTCAGCTACTACGCCAACGACCTGTTCACGTCGCTGCAGGTGGCGTTCCAGGGCGGTCGGGACGACGGCAG
CGGCGAACAGGGGTTCTGGGCCACCATGCTGGTGTTCGTGGTCCTGGCTGGCTGTTTCGTTGCGCGACTGCTGGCCGACC
TCTACATCACCCAGCGCTTCATCATGCGGTGGCGAATATGGCTGAGCCGCAACCTGATCGACGATTGGCTGGACCACCAC
GCCTACTACCGGGGCCGCTTCTCGCGCCAACCCGTCGACAATCCGGACCAGCGCATCCAACAGGACATCGACGTGTTCAC
CACCGGCGTCGGGCGCCAGACCAACAACCCGGCCTACACCTCCGACCGGGTCCTGCTGTTCGGTGCGGTGCAGGCGGCGC
TGTCGGCGGGGGCGTTCAGCGTGATCCTCTGGCAACTGTCCGGTCCGCTGACGCTCTTCGGTCTGACGCTGCCGCGCGCA
CTGTTCTGGATCGTGATCGCCTATGTGGTCGTGGTGACGTACGTCGCGGTCGTCGTCGGCCGGCCGCTGATCCGCTTGAG
CTACCTCGACGAAGTGCGCAACGCCGGTTTCCGGTACGCGCTGGTGCGTCTGCGCGACGCCGGCACCGCCGTCGGGATGT
ACCGGGGTGAGCGGGCCGAGGCCGCACTGCTGGACAACCGGCTCTCGGCGGTGATGACCAACTACCGGCGCTGGCTCAAC
CGCACGCTGCTGTTCATCGGGTGGAACGTGTCGATGAGTCAGGCGATCAACCCGCTGCCGTTCGTCGTGCAGGCGCAGCG
GCTCTTCGCCGGGCAGATCTCGCTCGGCGGGGTCATGCAGTCCGCCACGGCGTTCGGCGTCATCCATGACTCACTGTCGT
TCTTCCGCAACGCCTATGACGAGTTCGCCGGCTACCGCGCTGCCACGATCCGGCTCGACGGGCTGGTGACCGAGAACGCC
CGCGCCCGCTCCCTGAGCCGCATCACCACCGACGCATCGGTGACCGGGGCGCTGTGCATCGACGGCCTCGATGTGCGCGC
ACCCGACGGCCGAGCGTTGGTGGAAGGCCTCGACCTCGAGTTGCCGGCCGGCGAGACACTGGTGATCCGGGGTGAGTCCG
GGGTGGGTAAGACGGTGCTCCTGCAGACTCTGGCCGGTCTGTGGCCGTTCGCCACCGGCCGCGTCGAATTGCCGGTGGGT
GACGCGGCGATGTTCGTCCCTCAACTCCCCTATCTGCCGTTGGGGGATCTGCGCACGGTCGTGTCGTATCCGCGCCACGA
GGTTCGCGTCGACGACCGCGAGATCCAGCGGGCGCTCGCGGCGGTGGCGTTGTCCCACCTGGTGATCATCTGCCGCTTCC
AGGCCGAACGTTCGGGTGCGGGCGAGTCCGCTGCACCGCTGGTTGCCGCGGCGGCCGCCGCCGAAAAATCCTGTCGGACC
TCGATCCGCCGCGTCACGCGCCGTTCGCGGTGCACGGCCCGGCTGGGCGAGGTTCGGGACTGGTCCCAGGTGCTGTCCGT
CGGCGAACAGCAGCGGATCGCGTTCGCCCGCATCCTGCTGGCGCGGCCCACGGCGGTGTTCCTCGACGAGTCCACCTCCG
CGCTCGACGAGGGGCTCGAGGCGATGCTCTACACGCTTCTGCGAGGCGAACTGCCCTCGGCCACCGTGGTCAGCGTGAGC
CACCGCGCCACCGTCGAGCGCTTCCACGGCCACGAACTCAGACTGCTCGGCGACGGGGACTGGCGGCTGGCCCGACTCGC
CCGCGCAGGTTGA

Upstream 100 bases:

>100_bases
CGTCATCCGTCCCGACGGGTATCTGGGCTTCGCCGCTCACCGGCTCGACACCGAGGTGTTCGAAGGCTTCCTGCACAACA
CGTTTGGCTGACGGCCGCCG

Downstream 100 bases:

>100_bases
GCGCCTCGAACGGCCACGGGCAGTGCCTCGCGGTACCTTGCCCGAATGGAAATGTTCGCCCCGTCGCTCGACTGGAGCAG
CGAGCTGTGGACCTCTCTGC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MFRPSIDWGSELANSTVWVLGCFLITAPCLLLVLAAVGRFTEWGRQFRRITGRYFTGTQSVPVWAGLAALLLSSIVLVRI
SVLLSYYANDLFTSLQVAFQGGRDDGSGEQGFWATMLVFVVLAGCFVARLLADLYITQRFIMRWRIWLSRNLIDDWLDHH
AYYRGRFSRQPVDNPDQRIQQDIDVFTTGVGRQTNNPAYTSDRVLLFGAVQAALSAGAFSVILWQLSGPLTLFGLTLPRA
LFWIVIAYVVVVTYVAVVVGRPLIRLSYLDEVRNAGFRYALVRLRDAGTAVGMYRGERAEAALLDNRLSAVMTNYRRWLN
RTLLFIGWNVSMSQAINPLPFVVQAQRLFAGQISLGGVMQSATAFGVIHDSLSFFRNAYDEFAGYRAATIRLDGLVTENA
RARSLSRITTDASVTGALCIDGLDVRAPDGRALVEGLDLELPAGETLVIRGESGVGKTVLLQTLAGLWPFATGRVELPVG
DAAMFVPQLPYLPLGDLRTVVSYPRHEVRVDDREIQRALAAVALSHLVIICRFQAERSGAGESAAPLVAAAAAAEKSCRT
SIRRVTRRSRCTARLGEVRDWSQVLSVGEQQRIAFARILLARPTAVFLDESTSALDEGLEAMLYTLLRGELPSATVVSVS
HRATVERFHGHELRLLGDGDWRLARLARAG

Sequences:

>Translated_670_residues
MFRPSIDWGSELANSTVWVLGCFLITAPCLLLVLAAVGRFTEWGRQFRRITGRYFTGTQSVPVWAGLAALLLSSIVLVRI
SVLLSYYANDLFTSLQVAFQGGRDDGSGEQGFWATMLVFVVLAGCFVARLLADLYITQRFIMRWRIWLSRNLIDDWLDHH
AYYRGRFSRQPVDNPDQRIQQDIDVFTTGVGRQTNNPAYTSDRVLLFGAVQAALSAGAFSVILWQLSGPLTLFGLTLPRA
LFWIVIAYVVVVTYVAVVVGRPLIRLSYLDEVRNAGFRYALVRLRDAGTAVGMYRGERAEAALLDNRLSAVMTNYRRWLN
RTLLFIGWNVSMSQAINPLPFVVQAQRLFAGQISLGGVMQSATAFGVIHDSLSFFRNAYDEFAGYRAATIRLDGLVTENA
RARSLSRITTDASVTGALCIDGLDVRAPDGRALVEGLDLELPAGETLVIRGESGVGKTVLLQTLAGLWPFATGRVELPVG
DAAMFVPQLPYLPLGDLRTVVSYPRHEVRVDDREIQRALAAVALSHLVIICRFQAERSGAGESAAPLVAAAAAAEKSCRT
SIRRVTRRSRCTARLGEVRDWSQVLSVGEQQRIAFARILLARPTAVFLDESTSALDEGLEAMLYTLLRGELPSATVVSVS
HRATVERFHGHELRLLGDGDWRLARLARAG
>Mature_670_residues
MFRPSIDWGSELANSTVWVLGCFLITAPCLLLVLAAVGRFTEWGRQFRRITGRYFTGTQSVPVWAGLAALLLSSIVLVRI
SVLLSYYANDLFTSLQVAFQGGRDDGSGEQGFWATMLVFVVLAGCFVARLLADLYITQRFIMRWRIWLSRNLIDDWLDHH
AYYRGRFSRQPVDNPDQRIQQDIDVFTTGVGRQTNNPAYTSDRVLLFGAVQAALSAGAFSVILWQLSGPLTLFGLTLPRA
LFWIVIAYVVVVTYVAVVVGRPLIRLSYLDEVRNAGFRYALVRLRDAGTAVGMYRGERAEAALLDNRLSAVMTNYRRWLN
RTLLFIGWNVSMSQAINPLPFVVQAQRLFAGQISLGGVMQSATAFGVIHDSLSFFRNAYDEFAGYRAATIRLDGLVTENA
RARSLSRITTDASVTGALCIDGLDVRAPDGRALVEGLDLELPAGETLVIRGESGVGKTVLLQTLAGLWPFATGRVELPVG
DAAMFVPQLPYLPLGDLRTVVSYPRHEVRVDDREIQRALAAVALSHLVIICRFQAERSGAGESAAPLVAAAAAAEKSCRT
SIRRVTRRSRCTARLGEVRDWSQVLSVGEQQRIAFARILLARPTAVFLDESTSALDEGLEAMLYTLLRGELPSATVVSVS
HRATVERFHGHELRLLGDGDWRLARLARAG

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=647, Percent_Identity=27.3570324574961, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI9945308, Length=588, Percent_Identity=23.6394557823129, Blast_Score=133, Evalue=6e-31,
Organism=Homo sapiens, GI4506341, Length=252, Percent_Identity=29.3650793650794, Blast_Score=112, Evalue=1e-24,
Organism=Escherichia coli, GI1787772, Length=575, Percent_Identity=27.304347826087, Blast_Score=208, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17564250, Length=602, Percent_Identity=26.0797342192691, Blast_Score=145, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17532409, Length=569, Percent_Identity=25.4833040421793, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17532411, Length=572, Percent_Identity=24.1258741258741, Blast_Score=141, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI17542146, Length=288, Percent_Identity=27.0833333333333, Blast_Score=123, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI72000518, Length=229, Percent_Identity=33.6244541484716, Blast_Score=120, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17558960, Length=264, Percent_Identity=31.4393939393939, Blast_Score=116, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6322660, Length=264, Percent_Identity=26.8939393939394, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24638550, Length=610, Percent_Identity=21.1475409836066, Blast_Score=116, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24638552, Length=610, Percent_Identity=21.1475409836066, Blast_Score=116, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24638554, Length=610, Percent_Identity=21.1475409836066, Blast_Score=116, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24638546, Length=610, Percent_Identity=21.1475409836066, Blast_Score=116, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24638556, Length=610, Percent_Identity=21.1475409836066, Blast_Score=116, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24638548, Length=610, Percent_Identity=21.1475409836066, Blast_Score=116, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24638558, Length=595, Percent_Identity=21.344537815126, Blast_Score=116, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 73918; Mature: 73918

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00675 SIGMA54_INTERACT_1 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRPSIDWGSELANSTVWVLGCFLITAPCLLLVLAAVGRFTEWGRQFRRITGRYFTGTQS
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCC
VPVWAGLAALLLSSIVLVRISVLLSYYANDLFTSLQVAFQGGRDDGSGEQGFWATMLVFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
VLAGCFVARLLADLYITQRFIMRWRIWLSRNLIDDWLDHHAYYRGRFSRQPVDNPDQRIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
QDIDVFTTGVGRQTNNPAYTSDRVLLFGAVQAALSAGAFSVILWQLSGPLTLFGLTLPRA
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHEEECCCCCHHHHHHHHHHH
LFWIVIAYVVVVTYVAVVVGRPLIRLSYLDEVRNAGFRYALVRLRDAGTAVGMYRGERAE
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCCHH
AALLDNRLSAVMTNYRRWLNRTLLFIGWNVSMSQAINPLPFVVQAQRLFAGQISLGGVMQ
HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
SATAFGVIHDSLSFFRNAYDEFAGYRAATIRLDGLVTENARARSLSRITTDASVTGALCI
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEECCHHHHHHHHHHCCCCCCCCCEE
DGLDVRAPDGRALVEGLDLELPAGETLVIRGESGVGKTVLLQTLAGLWPFATGRVELPVG
CCCCCCCCCCHHHHCCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCC
DAAMFVPQLPYLPLGDLRTVVSYPRHEVRVDDREIQRALAAVALSHLVIICRFQAERSGA
CHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHCCCC
GESAAPLVAAAAAAEKSCRTSIRRVTRRSRCTARLGEVRDWSQVLSVGEQQRIAFARILL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHH
ARPTAVFLDESTSALDEGLEAMLYTLLRGELPSATVVSVSHRATVERFHGHELRLLGDGD
HCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCEEEEEECCC
WRLARLARAG
HHHHHHHHCC
>Mature Secondary Structure
MFRPSIDWGSELANSTVWVLGCFLITAPCLLLVLAAVGRFTEWGRQFRRITGRYFTGTQS
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCC
VPVWAGLAALLLSSIVLVRISVLLSYYANDLFTSLQVAFQGGRDDGSGEQGFWATMLVFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
VLAGCFVARLLADLYITQRFIMRWRIWLSRNLIDDWLDHHAYYRGRFSRQPVDNPDQRIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
QDIDVFTTGVGRQTNNPAYTSDRVLLFGAVQAALSAGAFSVILWQLSGPLTLFGLTLPRA
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHEEECCCCCHHHHHHHHHHH
LFWIVIAYVVVVTYVAVVVGRPLIRLSYLDEVRNAGFRYALVRLRDAGTAVGMYRGERAE
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCCHH
AALLDNRLSAVMTNYRRWLNRTLLFIGWNVSMSQAINPLPFVVQAQRLFAGQISLGGVMQ
HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
SATAFGVIHDSLSFFRNAYDEFAGYRAATIRLDGLVTENARARSLSRITTDASVTGALCI
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEECCHHHHHHHHHHCCCCCCCCCEE
DGLDVRAPDGRALVEGLDLELPAGETLVIRGESGVGKTVLLQTLAGLWPFATGRVELPVG
CCCCCCCCCCHHHHCCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCC
DAAMFVPQLPYLPLGDLRTVVSYPRHEVRVDDREIQRALAAVALSHLVIICRFQAERSGA
CHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHCCCC
GESAAPLVAAAAAAEKSCRTSIRRVTRRSRCTARLGEVRDWSQVLSVGEQQRIAFARILL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHH
ARPTAVFLDESTSALDEGLEAMLYTLLRGELPSATVVSVSHRATVERFHGHELRLLGDGD
HCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCEEEEEECCC
WRLARLARAG
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]