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The map label for this gene is yeaM [H]

Identifier: 119868776

GI number: 119868776

Start: 2869313

End: 2870164

Strand: Direct

Name: yeaM [H]

Synonym: Mkms_2744

Alternate gene names: 119868776

Gene position: 2869313-2870164 (Clockwise)

Preceding gene: 119868772

Following gene: 119868778

Centisome position: 50.01

GC content: 71.24

Gene sequence:

>852_bases
GTGACCGTCTCTGCGCTATCGGCCAAGGGTTTAGCCGAACCGGCCAACCTGTCCGAGCGGGTGATCGACCTGCGCCGCGG
CGGCCGCGCGCTGGCGGGCAGCTACCTCTACCAGGGCGACGGCCTGATCACCGGTTGGCATTCGCACGACGTGCACCAGA
TCGAGTACGCCATCGGCGGCGTGGTCGAGGTCGAGACCCCCTCGGGGCACTACCTCGTCCCGCCGCAGCAGGCCGCGTGG
CTGCCGATGGGCCTCGAACATCAGGCCACGATGAACGCCGACGTCCGCACCGTCGCGGTGATGTTCGACCGGGCCCTGAT
CCCCGACGGCGGCAACCGCGCCCGGATCCTGGCCGTCTCACCGCTGATCCGGGAGATGATGATCTACGCGCTGCGCTGGC
CGATCGACCGCCGCGCGGGCGCCGTTCGCGACGAGGCGGCGGCCGACGCCTTCTTCCAGACCCTGGGCAACCTCGTGATC
GAGGCGCTCGACCACGAGGCCCCGTTGAGCCTGCCGAGTTCCGAACATCCGATCGTGGCCGCGGCGCTGGCCTACACGCG
TGAACACCTGCAGGCCGTGACCGCCGACGAGGTGAGCCGCGCGGTGGCGGTGTCCGAGCGCACGCTGCGGCGCCTGTTCG
CCGAGGAACTCGGGCTGTCGTGGCGGACCTATCTGCTGCACGCCAGGATGCTGCGCGCGATGGCCCTGCTGGCCGCGCCC
GGGCAGTCGGTGCAGGAGACGTCGGCGGCGGTCGGATTCGACAGCCTCAGTTCCTTCACGCGGGCGTTCACGCAGTTCTG
CGGGGAGACGCCGTCGGCCTACCGGCGCCGGGCGGCGACGACCGCGGTGTGA

Upstream 100 bases:

>100_bases
GTCGTCGATGCTCACCAGAATCAGGTCGTCGACATTCACAGGCACTCCTTCACGTGGTCACGATCACACTGGACTTGTTC
CAGTTGTACCCTTCATAGGT

Downstream 100 bases:

>100_bases
GGCGACGCCTCAGAACGGGAAGCCCAACTCGGCCGGAACGTCGGCGGCGAAGGCCCTGTCGAGTTGCGTGATCAGATCGG
AATCGTTGCCGCGCAACCGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTVSALSAKGLAEPANLSERVIDLRRGGRALAGSYLYQGDGLITGWHSHDVHQIEYAIGGVVEVETPSGHYLVPPQQAAW
LPMGLEHQATMNADVRTVAVMFDRALIPDGGNRARILAVSPLIREMMIYALRWPIDRRAGAVRDEAAADAFFQTLGNLVI
EALDHEAPLSLPSSEHPIVAAALAYTREHLQAVTADEVSRAVAVSERTLRRLFAEELGLSWRTYLLHARMLRAMALLAAP
GQSVQETSAAVGFDSLSSFTRAFTQFCGETPSAYRRRAATTAV

Sequences:

>Translated_283_residues
MTVSALSAKGLAEPANLSERVIDLRRGGRALAGSYLYQGDGLITGWHSHDVHQIEYAIGGVVEVETPSGHYLVPPQQAAW
LPMGLEHQATMNADVRTVAVMFDRALIPDGGNRARILAVSPLIREMMIYALRWPIDRRAGAVRDEAAADAFFQTLGNLVI
EALDHEAPLSLPSSEHPIVAAALAYTREHLQAVTADEVSRAVAVSERTLRRLFAEELGLSWRTYLLHARMLRAMALLAAP
GQSVQETSAAVGFDSLSSFTRAFTQFCGETPSAYRRRAATTAV
>Mature_282_residues
TVSALSAKGLAEPANLSERVIDLRRGGRALAGSYLYQGDGLITGWHSHDVHQIEYAIGGVVEVETPSGHYLVPPQQAAWL
PMGLEHQATMNADVRTVAVMFDRALIPDGGNRARILAVSPLIREMMIYALRWPIDRRAGAVRDEAAADAFFQTLGNLVIE
ALDHEAPLSLPSSEHPIVAAALAYTREHLQAVTADEVSRAVAVSERTLRRLFAEELGLSWRTYLLHARMLRAMALLAAPG
QSVQETSAAVGFDSLSSFTRAFTQFCGETPSAYRRRAATTAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=246, Percent_Identity=26.4227642276423, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30760; Mature: 30629

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSALSAKGLAEPANLSERVIDLRRGGRALAGSYLYQGDGLITGWHSHDVHQIEYAIGG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCEEEECCCEEECCCCCCHHHHHHHHCC
VVEVETPSGHYLVPPQQAAWLPMGLEHQATMNADVRTVAVMFDRALIPDGGNRARILAVS
EEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEC
PLIREMMIYALRWPIDRRAGAVRDEAAADAFFQTLGNLVIEALDHEAPLSLPSSEHPIVA
HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
AALAYTREHLQAVTADEVSRAVAVSERTLRRLFAEELGLSWRTYLLHARMLRAMALLAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
GQSVQETSAAVGFDSLSSFTRAFTQFCGETPSAYRRRAATTAV
CCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TVSALSAKGLAEPANLSERVIDLRRGGRALAGSYLYQGDGLITGWHSHDVHQIEYAIGG
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCEEEECCCEEECCCCCCHHHHHHHHCC
VVEVETPSGHYLVPPQQAAWLPMGLEHQATMNADVRTVAVMFDRALIPDGGNRARILAVS
EEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEC
PLIREMMIYALRWPIDRRAGAVRDEAAADAFFQTLGNLVIEALDHEAPLSLPSSEHPIVA
HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
AALAYTREHLQAVTADEVSRAVAVSERTLRRLFAEELGLSWRTYLLHARMLRAMALLAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
GQSVQETSAAVGFDSLSSFTRAFTQFCGETPSAYRRRAATTAV
CCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]