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The map label for this gene is ydhC [H]

Identifier: 119868601

GI number: 119868601

Start: 2696177

End: 2696830

Strand: Reverse

Name: ydhC [H]

Synonym: Mkms_2566

Alternate gene names: 119868601

Gene position: 2696830-2696177 (Counterclockwise)

Preceding gene: 119868607

Following gene: 119868598

Centisome position: 47.01

GC content: 69.72

Gene sequence:

>654_bases
GTGATCAAAAGCGTTGACAGCGAGCATGTATCGCGCGCCGATGCGCATTACCTGCGCGTCAAACAGGATCTGCTCGGCGG
CCGATTCGAGCCTGGCACAGTGCTCTTGGAGACCACGCTCGGAAAGCTCTACGGGGTGTCCCGCACGCCGATGCGCGATG
CGCTGGCGCGGCTGGCCCACGACGGGCTCATCGAACGCCACGAACGCGGCTTCATCGTCCGGCAGCGATCCGCCGAGGAG
GTCGCGGCGATCTACGAGGCCCGGATCCCGCTGGAGGCGCAGGCCGCCGCGCTCGCCGCTCGCCGCCGCGGGGCCGTCGA
CCTCGAGCGACTCGAGCACACGCTGACGCTGCGTCGCGACGAGGAGGACCCCGCGCTCTTCCCGGAACTCAACGGGCTGT
TCCATCTCGCGCTGCGCGGCGCCGCCCGCAACGCCGTCATCGAATCGACCCTGGGCCACCTCGACGACATGCTCACCGAC
TACCGGCCGGACAGTTCGGCGCCGAAGGTGGTGGGGCGCGGGCTGTCCGAACACGAGCAGATCATGGCCGCCATCCGCGA
CAGCGACGCCGCCGCGGCGAGTGAACTCATGACCGCCCACCTCGAACGCATGCGCGATCTGCGCATCGCCGCCCACGTGC
GGCACCGGCACTGA

Upstream 100 bases:

>100_bases
GTTCGGCACCGAGGGGTGCGGTCCGCTCAGGCCACATCACGTACGCGAGCGTATACGCTGTCGCGCGGGGCCGTCAAACG
TACGGGAGGATGAGATCACG

Downstream 100 bases:

>100_bases
CCGTCAGCGGATCGGCAGGCCGGTCAGCGCACGGCCGATGACCAGGCGCTGGATCTCGCTGGTGCCCTCGAAGATCGTGA
AGATCTTCGCGTCGCGGTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIKSVDSEHVSRADAHYLRVKQDLLGGRFEPGTVLLETTLGKLYGVSRTPMRDALARLAHDGLIERHERGFIVRQRSAEE
VAAIYEARIPLEAQAAALAARRRGAVDLERLEHTLTLRRDEEDPALFPELNGLFHLALRGAARNAVIESTLGHLDDMLTD
YRPDSSAPKVVGRGLSEHEQIMAAIRDSDAAAASELMTAHLERMRDLRIAAHVRHRH

Sequences:

>Translated_217_residues
MIKSVDSEHVSRADAHYLRVKQDLLGGRFEPGTVLLETTLGKLYGVSRTPMRDALARLAHDGLIERHERGFIVRQRSAEE
VAAIYEARIPLEAQAAALAARRRGAVDLERLEHTLTLRRDEEDPALFPELNGLFHLALRGAARNAVIESTLGHLDDMLTD
YRPDSSAPKVVGRGLSEHEQIMAAIRDSDAAAASELMTAHLERMRDLRIAAHVRHRH
>Mature_217_residues
MIKSVDSEHVSRADAHYLRVKQDLLGGRFEPGTVLLETTLGKLYGVSRTPMRDALARLAHDGLIERHERGFIVRQRSAEE
VAAIYEARIPLEAQAAALAARRRGAVDLERLEHTLTLRRDEEDPALFPELNGLFHLALRGAARNAVIESTLGHLDDMLTD
YRPDSSAPKVVGRGLSEHEQIMAAIRDSDAAAASELMTAHLERMRDLRIAAHVRHRH

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24212; Mature: 24212

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSVDSEHVSRADAHYLRVKQDLLGGRFEPGTVLLETTLGKLYGVSRTPMRDALARLAH
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHH
DGLIERHERGFIVRQRSAEEVAAIYEARIPLEAQAAALAARRRGAVDLERLEHTLTLRRD
HHHHHHHHCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
EEDPALFPELNGLFHLALRGAARNAVIESTLGHLDDMLTDYRPDSSAPKVVGRGLSEHEQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHH
IMAAIRDSDAAAASELMTAHLERMRDLRIAAHVRHRH
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIKSVDSEHVSRADAHYLRVKQDLLGGRFEPGTVLLETTLGKLYGVSRTPMRDALARLAH
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHH
DGLIERHERGFIVRQRSAEEVAAIYEARIPLEAQAAALAARRRGAVDLERLEHTLTLRRD
HHHHHHHHCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
EEDPALFPELNGLFHLALRGAARNAVIESTLGHLDDMLTDYRPDSSAPKVVGRGLSEHEQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHH
IMAAIRDSDAAAASELMTAHLERMRDLRIAAHVRHRH
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]