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The map label for this gene is ycdM [C]

Identifier: 119867981

GI number: 119867981

Start: 2061056

End: 2062231

Strand: Reverse

Name: ycdM [C]

Synonym: Mkms_1944

Alternate gene names: 119867981

Gene position: 2062231-2061056 (Counterclockwise)

Preceding gene: 119867984

Following gene: 119867980

Centisome position: 35.94

GC content: 70.49

Gene sequence:

>1176_bases
ATGCCGGCGCGCCCCTATGCTGAGCGAGTGCCCAGCGATTCGTCGGCGCCGACGGTTCAGCCCGCCGCTTTCCTGCGCAC
GACCCTGCCGCTGGACCTGACCGGGCTGGCGGCCCTCGACAGCGGCCGCTACCACTCGATCTGGCTCCCCGACCACATGG
TCAGTTTCTGGCCGGACTCGATCTGGACACCGGAGTTCACCGACCTCGCCGACACCTCCCCCTCACCGCACCGCCACCTC
GACGGGATGGCGGTGGCCGCCGCCGCTGCCGTATTGACCGAGTCCACCCCACTGGCGACCGCGGTCGTCGACACCGTCCG
GCGCCACCCCGCCTCACTGGCCCAGAGCGCGCTGACCATCGACCACCTGTCCGGCGGCCGCTTCATCCTGGGACTCGGCA
GCGGCGAGGCCGAGAACATCGTCCCGTACGGATTCGACTTCGACCGGCCCGTGAGCCGGTTCGAGGAGGCGCTGCACGTC
ATCCGGTTGTTGTGGGACTCCGACGGACCCGTCGACTTCACCGGACGGTTCCACCGACTGCGAGGGGCGCGCCTGGACAC
CGAACCGTTCGGCGGCCGCGTCCCGCCGATCTGGATCGGAGCCAGCGGACCGCGGATGCTCGACCTCGTCGGTCGCCACG
CCGACGGATGGTGGCCGGCCGGGGCGTGGACGCCGCAGCACTACGCCGACATGCTCGGCGCGGTCCGGAGCTCGGCCGAA
CGGGCCGGGCGCGATCCGATGGCGATCACCCCGTGCTTCATCCAGGTGTGCCTGATCGCGAAAGACGATGCCGCCCTGGC
TGAGATCCTGGACGCACCGCTGGTCAAGGCGTTCCTGCTGCAGGTGTCCGCGCAGACCCTGCGCGCGTTCGGTCACGAGC
ATCCGATGGGCGACGACTGGCGGGGGTTCCACGACATCGACCCGGCGACGCTGACCCGCGAACGCATCGTCGACTTCCTC
GCCCGGGTGCGGCCCGAGGCGATCCTCGCCGTCCTGCCGCACGGCACACCCGCTCAGGTCGCCCGCACCGTCAAGGACTA
CGTCGAGGCCGGGCTGCGGGTGCCCAAGATCATGGACTACGGCGCCATGGCCGGACTGCGGTTCGCGGCCGCATCCGCCG
ACAACGTGCGCGAGGCCGAGGACGAACTGATGAGACTGTGCGGGGTACCGATATGA

Upstream 100 bases:

>100_bases
GGTGTCCGTCATCGGCAGCTCCCCTCGTCGCACGCCGGCGGCAGAGCGGAAACGCCCTTGCGTGTGACGAGAAGGCTATT
CTCCGAAAAGGCGCGGGGCA

Downstream 100 bases:

>100_bases
GCGAACGCCTGCACGCCCAGGACCTGTTGGCCCGCGCGGAAGCGGCCACCGGACTGTACGACTACGGCGATCCGACGCTG
CCCGCACGGTTCGGCATCGC

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPARPYAERVPSDSSAPTVQPAAFLRTTLPLDLTGLAALDSGRYHSIWLPDHMVSFWPDSIWTPEFTDLADTSPSPHRHL
DGMAVAAAAAVLTESTPLATAVVDTVRRHPASLAQSALTIDHLSGGRFILGLGSGEAENIVPYGFDFDRPVSRFEEALHV
IRLLWDSDGPVDFTGRFHRLRGARLDTEPFGGRVPPIWIGASGPRMLDLVGRHADGWWPAGAWTPQHYADMLGAVRSSAE
RAGRDPMAITPCFIQVCLIAKDDAALAEILDAPLVKAFLLQVSAQTLRAFGHEHPMGDDWRGFHDIDPATLTRERIVDFL
ARVRPEAILAVLPHGTPAQVARTVKDYVEAGLRVPKIMDYGAMAGLRFAAASADNVREAEDELMRLCGVPI

Sequences:

>Translated_391_residues
MPARPYAERVPSDSSAPTVQPAAFLRTTLPLDLTGLAALDSGRYHSIWLPDHMVSFWPDSIWTPEFTDLADTSPSPHRHL
DGMAVAAAAAVLTESTPLATAVVDTVRRHPASLAQSALTIDHLSGGRFILGLGSGEAENIVPYGFDFDRPVSRFEEALHV
IRLLWDSDGPVDFTGRFHRLRGARLDTEPFGGRVPPIWIGASGPRMLDLVGRHADGWWPAGAWTPQHYADMLGAVRSSAE
RAGRDPMAITPCFIQVCLIAKDDAALAEILDAPLVKAFLLQVSAQTLRAFGHEHPMGDDWRGFHDIDPATLTRERIVDFL
ARVRPEAILAVLPHGTPAQVARTVKDYVEAGLRVPKIMDYGAMAGLRFAAASADNVREAEDELMRLCGVPI
>Mature_390_residues
PARPYAERVPSDSSAPTVQPAAFLRTTLPLDLTGLAALDSGRYHSIWLPDHMVSFWPDSIWTPEFTDLADTSPSPHRHLD
GMAVAAAAAVLTESTPLATAVVDTVRRHPASLAQSALTIDHLSGGRFILGLGSGEAENIVPYGFDFDRPVSRFEEALHVI
RLLWDSDGPVDFTGRFHRLRGARLDTEPFGGRVPPIWIGASGPRMLDLVGRHADGWWPAGAWTPQHYADMLGAVRSSAER
AGRDPMAITPCFIQVCLIAKDDAALAEILDAPLVKAFLLQVSAQTLRAFGHEHPMGDDWRGFHDIDPATLTRERIVDFLA
RVRPEAILAVLPHGTPAQVARTVKDYVEAGLRVPKIMDYGAMAGLRFAAASADNVREAEDELMRLCGVPI

Specific function: Catalyzes the reduction of the keto moiety of phthiodiolone dimycocerosates (DIM B) and glycosylated phenolphthiodiolone dimycocerosates to form the intermediate compounds phthiotriol and glycosylated phenolphthiotriol dimycocerosates during phthiocerol d

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mer family. Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 42578; Mature: 42447

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARPYAERVPSDSSAPTVQPAAFLRTTLPLDLTGLAALDSGRYHSIWLPDHMVSFWPDS
CCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCEEEEECCHHHHHHCCCC
IWTPEFTDLADTSPSPHRHLDGMAVAAAAAVLTESTPLATAVVDTVRRHPASLAQSALTI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHH
DHLSGGRFILGLGSGEAENIVPYGFDFDRPVSRFEEALHVIRLLWDSDGPVDFTGRFHRL
EECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RGARLDTEPFGGRVPPIWIGASGPRMLDLVGRHADGWWPAGAWTPQHYADMLGAVRSSAE
CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RAGRDPMAITPCFIQVCLIAKDDAALAEILDAPLVKAFLLQVSAQTLRAFGHEHPMGDDW
HCCCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RGFHDIDPATLTRERIVDFLARVRPEAILAVLPHGTPAQVARTVKDYVEAGLRVPKIMDY
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHH
GAMAGLRFAAASADNVREAEDELMRLCGVPI
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PARPYAERVPSDSSAPTVQPAAFLRTTLPLDLTGLAALDSGRYHSIWLPDHMVSFWPDS
CCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCEEEEECCHHHHHHCCCC
IWTPEFTDLADTSPSPHRHLDGMAVAAAAAVLTESTPLATAVVDTVRRHPASLAQSALTI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHH
DHLSGGRFILGLGSGEAENIVPYGFDFDRPVSRFEEALHVIRLLWDSDGPVDFTGRFHRL
EECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
RGARLDTEPFGGRVPPIWIGASGPRMLDLVGRHADGWWPAGAWTPQHYADMLGAVRSSAE
CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RAGRDPMAITPCFIQVCLIAKDDAALAEILDAPLVKAFLLQVSAQTLRAFGHEHPMGDDW
HCCCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RGFHDIDPATLTRERIVDFLARVRPEAILAVLPHGTPAQVARTVKDYVEAGLRVPKIMDY
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHH
GAMAGLRFAAASADNVREAEDELMRLCGVPI
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]