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The map label for this gene is ybaK [H]

Identifier: 119867446

GI number: 119867446

Start: 1499241

End: 1499756

Strand: Reverse

Name: ybaK [H]

Synonym: Mkms_1396

Alternate gene names: 119867446

Gene position: 1499756-1499241 (Counterclockwise)

Preceding gene: 119867451

Following gene: 119867441

Centisome position: 26.14

GC content: 70.74

Gene sequence:

>516_bases
TTGTTCCCAGCCACCCCTAAGCTGACCGGCGTGCGCGCAGCTACACCGGCGATCGCCGCTCTCGTCTCCGACGGAGCGCC
GCATGAGGTCCTGCAGTACCGGCACGACCCGCGCGCCGGCTCGTACGGGGACGAGGCCGTCGCGGAACTCGCCGAAACGG
GCATCGACGCCCGGCAGGTGTTCAAGACACTGGTGATCGCGGTCCCGAAGGGCCTGGCGGTGGCGGTGCTGCCGGTGCCC
GCCAAGCTCTCGCTCAAGGCGGCGGCCGCGGCGCTCGGTGTGCCGAAGGCGGCGATGGCCGAGCGGGCCGCCGCGGAACG
GTCGACGGGTTACGTCCTCGGCGGCATCTCCCCGCTCGGTCAGCGTAGACGGCTGCCGACGGTGATCGATTCGTCGGCGC
TGCAGTGGGACCGGGTGTTGTGCAGCGCCGGTAAGCGGGGACTCGAAATCGCCGTGGCGCCAGACGATCTCGTTCGGCTG
ACCGACGCGGTGACCGCGGACATCGCCGTCATTTGA

Upstream 100 bases:

>100_bases
GGCACCAGAGTCCTCCCTTGATCCTAGAGGTTGTGACCGACACGTTCTCGGCTGCGTGCGCACCCGAAGTCTTTCCCAAC
AACAGCAGGACCGCGCGAGG

Downstream 100 bases:

>100_bases
CGTCGGAGGGGTGCCGGGCCAGCGGCGTGACGTGGATGTCCATGTAGGGGAACAACGGCAGAGCCGAGACCAGCTCGTGC
AGTTCATCGTTCGACTCGAC

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MFPATPKLTGVRAATPAIAALVSDGAPHEVLQYRHDPRAGSYGDEAVAELAETGIDARQVFKTLVIAVPKGLAVAVLPVP
AKLSLKAAAAALGVPKAAMAERAAAERSTGYVLGGISPLGQRRRLPTVIDSSALQWDRVLCSAGKRGLEIAVAPDDLVRL
TDAVTADIAVI

Sequences:

>Translated_171_residues
MFPATPKLTGVRAATPAIAALVSDGAPHEVLQYRHDPRAGSYGDEAVAELAETGIDARQVFKTLVIAVPKGLAVAVLPVP
AKLSLKAAAAALGVPKAAMAERAAAERSTGYVLGGISPLGQRRRLPTVIDSSALQWDRVLCSAGKRGLEIAVAPDDLVRL
TDAVTADIAVI
>Mature_171_residues
MFPATPKLTGVRAATPAIAALVSDGAPHEVLQYRHDPRAGSYGDEAVAELAETGIDARQVFKTLVIAVPKGLAVAVLPVP
AKLSLKAAAAALGVPKAAMAERAAAERSTGYVLGGISPLGQRRRLPTVIDSSALQWDRVLCSAGKRGLEIAVAPDDLVRL
TDAVTADIAVI

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=158, Percent_Identity=48.1012658227848, Blast_Score=141, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17624; Mature: 17624

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPATPKLTGVRAATPAIAALVSDGAPHEVLQYRHDPRAGSYGDEAVAELAETGIDARQV
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHH
FKTLVIAVPKGLAVAVLPVPAKLSLKAAAAALGVPKAAMAERAAAERSTGYVLGGISPLG
HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
QRRRLPTVIDSSALQWDRVLCSAGKRGLEIAVAPDDLVRLTDAVTADIAVI
CCCCCCHHHCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHEEEC
>Mature Secondary Structure
MFPATPKLTGVRAATPAIAALVSDGAPHEVLQYRHDPRAGSYGDEAVAELAETGIDARQV
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHH
FKTLVIAVPKGLAVAVLPVPAKLSLKAAAAALGVPKAAMAERAAAERSTGYVLGGISPLG
HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
QRRRLPTVIDSSALQWDRVLCSAGKRGLEIAVAPDDLVRLTDAVTADIAVI
CCCCCCHHHCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]