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The map label for this gene is ycdM [C]

Identifier: 119866516

GI number: 119866516

Start: 513875

End: 514813

Strand: Reverse

Name: ycdM [C]

Synonym: Mkms_0462

Alternate gene names: 119866516

Gene position: 514813-513875 (Counterclockwise)

Preceding gene: 119866517

Following gene: 119866515

Centisome position: 8.97

GC content: 70.18

Gene sequence:

>939_bases
TTGGCCGCCGTGGATTTCCGTGTCTTCGTCGAACCGCAGCAGGGCGCCCGCTACGCCGACCAACTCGCCGTGGCCCGAGC
CGCCGAACAACTCGGCTACTCGGCCTTCTTCCGCTCCGACCACTACCTCGCGATGAGCGGTGACGGTCTGCCCGGGCCGA
CGGACTCCTGGGTGACGCTGGCCGGCATCGCCCGTGAGACGTCGTCGATCCGGCTCGGCACGATGGTCACGTCGGCGACG
TTCCGCCACCCCGGCCCGCTGGCGGTCTCCGTCGCGCAGGTCGACGAGATGAGCGGCGGACGTGTCGAACTGGGACTGGG
CGCAGGGTGGTTCGAGGCCGAACACAAGGCGTACGCGATCCCCTTCCCGCCGCTGGGTGAACGGTTCGACCGGCTCACCG
AACAACTCGACATCCTCACCGGCATGTGGGCCACCCCCGTCGGCGAGACGTTCGACTACAGCGGCACCCACTACACCGTC
GTCGACTCCCCTGCCCTGCCCAAACCGGTGCAGGCGGTGCCGCCGGTCATCATCGGCGGCCAGGGCGCCAAGCGCACGCC
GGCGCTGGCGGCGAAGTACGCGGGCGAGTTCAACGTGCCGTTCGTCCCCCTGGACACGTTGAGCACCCAGTTCGACCGGG
TCAGGGCGGCGGTCGCCGAGGCGGGCCGCGAACCGGATTCGATGGTCTACTCCGCGGCGTTCGTCCTGTGTGCGGGCGCC
GACGACGCCGAGATCGCCCGGCGCGCCGACGCGATCGGCCGCGAGGTCGACGAACTGCGCAGCAACTCGCCGATGGTCGG
CACACCGGCGGAGATCGTCGACAAGCTCGGACCGTTCGCCGAGGCCGGCGTGGAGCGGGTGTACCTCCAGATGTTGGACA
TGGCAGACCTCGACCACCTGGCGCTGGTCGCCGGTCAGGTGCTGCCCCAGCTGCGCTGA

Upstream 100 bases:

>100_bases
GAATTGCTGCTCTTCGCGGTCGGTCGCGAGGCCCGCGTCGAATTCGAGGGTGACCCCGCCGCCGTCCAGGCGCTGCGCGA
TGCCCCGAAGGGTCTGTAGG

Downstream 100 bases:

>100_bases
CCCGGCACGCCGCACCTGGTCGCGGTTAGGATCGGTGCCCGTGACGGGCGCCCGCGACGACGACGAGCATTCCGGCCGAC
AGGTCGATGCGTCGACTCCG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAAVDFRVFVEPQQGARYADQLAVARAAEQLGYSAFFRSDHYLAMSGDGLPGPTDSWVTLAGIARETSSIRLGTMVTSAT
FRHPGPLAVSVAQVDEMSGGRVELGLGAGWFEAEHKAYAIPFPPLGERFDRLTEQLDILTGMWATPVGETFDYSGTHYTV
VDSPALPKPVQAVPPVIIGGQGAKRTPALAAKYAGEFNVPFVPLDTLSTQFDRVRAAVAEAGREPDSMVYSAAFVLCAGA
DDAEIARRADAIGREVDELRSNSPMVGTPAEIVDKLGPFAEAGVERVYLQMLDMADLDHLALVAGQVLPQLR

Sequences:

>Translated_312_residues
MAAVDFRVFVEPQQGARYADQLAVARAAEQLGYSAFFRSDHYLAMSGDGLPGPTDSWVTLAGIARETSSIRLGTMVTSAT
FRHPGPLAVSVAQVDEMSGGRVELGLGAGWFEAEHKAYAIPFPPLGERFDRLTEQLDILTGMWATPVGETFDYSGTHYTV
VDSPALPKPVQAVPPVIIGGQGAKRTPALAAKYAGEFNVPFVPLDTLSTQFDRVRAAVAEAGREPDSMVYSAAFVLCAGA
DDAEIARRADAIGREVDELRSNSPMVGTPAEIVDKLGPFAEAGVERVYLQMLDMADLDHLALVAGQVLPQLR
>Mature_311_residues
AAVDFRVFVEPQQGARYADQLAVARAAEQLGYSAFFRSDHYLAMSGDGLPGPTDSWVTLAGIARETSSIRLGTMVTSATF
RHPGPLAVSVAQVDEMSGGRVELGLGAGWFEAEHKAYAIPFPPLGERFDRLTEQLDILTGMWATPVGETFDYSGTHYTVV
DSPALPKPVQAVPPVIIGGQGAKRTPALAAKYAGEFNVPFVPLDTLSTQFDRVRAAVAEAGREPDSMVYSAAFVLCAGAD
DAEIARRADAIGREVDELRSNSPMVGTPAEIVDKLGPFAEAGVERVYLQMLDMADLDHLALVAGQVLPQLR

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=213, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 33368; Mature: 33237

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVDFRVFVEPQQGARYADQLAVARAAEQLGYSAFFRSDHYLAMSGDGLPGPTDSWVTL
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHEECCCCEEEEECCCCCCCCCCCEEE
AGIARETSSIRLGTMVTSATFRHPGPLAVSVAQVDEMSGGRVELGLGAGWFEAEHKAYAI
EHHHHCCCCEEEEHEEECCCCCCCCCCEEEEEHHHCCCCCEEEEECCCCEEECCCCEEEC
PFPPLGERFDRLTEQLDILTGMWATPVGETFDYSGTHYTVVDSPALPKPVQAVPPVIIGG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCEEECC
QGAKRTPALAAKYAGEFNVPFVPLDTLSTQFDRVRAAVAEAGREPDSMVYSAAFVLCAGA
CCCCCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECC
DDAEIARRADAIGREVDELRSNSPMVGTPAEIVDKLGPFAEAGVERVYLQMLDMADLDHL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
ALVAGQVLPQLR
HHHHHHHHCCCC
>Mature Secondary Structure 
AAVDFRVFVEPQQGARYADQLAVARAAEQLGYSAFFRSDHYLAMSGDGLPGPTDSWVTL
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHEECCCCEEEEECCCCCCCCCCCEEE
AGIARETSSIRLGTMVTSATFRHPGPLAVSVAQVDEMSGGRVELGLGAGWFEAEHKAYAI
EHHHHCCCCEEEEHEEECCCCCCCCCCEEEEEHHHCCCCCEEEEECCCCEEECCCCEEEC
PFPPLGERFDRLTEQLDILTGMWATPVGETFDYSGTHYTVVDSPALPKPVQAVPPVIIGG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCEEECC
QGAKRTPALAAKYAGEFNVPFVPLDTLSTQFDRVRAAVAEAGREPDSMVYSAAFVLCAGA
CCCCCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECC
DDAEIARRADAIGREVDELRSNSPMVGTPAEIVDKLGPFAEAGVERVYLQMLDMADLDHL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
ALVAGQVLPQLR
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]