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The map label for this gene is yagA [C]

Identifier: 119854966

GI number: 119854966

Start: 79506

End: 81038

Strand: Reverse

Name: yagA [C]

Synonym: Mkms_5572

Alternate gene names: 119854966

Gene position: 81038-79506 (Counterclockwise)

Preceding gene: 119854967

Following gene: 119854965

Centisome position: 26.83

GC content: 67.97

Gene sequence:

>1533_bases
GTGATCCTCGCCAGGGCGCCTGCCCGACAGACGGTTTCGGGTGGGGCCATCGAGTGTGAGGAGGGCACTGCGGTGTCGTT
GGAGGACCACAAGCGTCGGGAACGGGCGAATGCGATCGGGTTGTTCCGCTATCAGGTGATCTGCCCCGCGCTGGAAGAGG
GGCTCTCGACCCGGCAGCGGGGCCGGGTAGTCCGTGAGATCGCCGGCCGTCGCCATATCGACCCGTTCGGCACCCAGGTC
CAGATCGCGCGGGCCACCCTGGACCGCTGGATCCGGCGCTACCGCGGCGGCGGGTTCGAAGCGCTGGTCCCTGAACCGCG
CCGGCTGGCCACCCGCACCGATGTCCAGGTGCTGGAGTTGGCCGCCTCGCTCAAACGGGAGAACCCGGCCCGCACCGCCG
CGCAGGTGGCCCGGATTCTGCGCACCGCGACTGGGTGGGCGCCCTCGGAATCGACGCTGCTGCGCCACTTCCATCGGTGT
GAGCTGATGGGCCCGGCCGCAGGTCAGAGCGCTGAGGTGTTCGGGCGGTTCGAAGCCCCCGACCCGAATGAACTGTGGGT
CGGCGATGCCCTGCACGGCCCGCGGGTCGGGGACCGCAAAACCTACCTCTTCGCGTTCCTCGACGACCATTCTCGGTTGG
TGGTCGGGCACCGCTTCGGGTTCGCCGAAGACACCGTGCGCCTGGCGGCGGCGTTGAAGCCGGCGTTGGCTGCTCGCGGA
GTTCCCGCCTCGATCTATGTCGACAACGGGTCCGCGTTCGTCGATGCGTGGTTGCTGCGGGCGTGCGCGAAACTCGGGAT
CCGGCTGGTGCATTCCGCGCCCGGTCGCCCGCAGGGCCGCGGCAAGATCGAACGGTTCTTCCGCACCGTGCGTGAACAGT
TCCTCGTCGAGGTGACCGACACCACCGCTGAGGACCTCGCTGCGGCCGGGGTCGACCATGCTGGTGCGTTGTTGGAGCTC
AACCGGCTGTTCATGGCCTGGGTTGAAACCGAATACCACCGCCGAATCCATACCGAGACCGGGCAATCCCCACTGGCCCG
CTGGGAAGCCGGCTTCGACCGGCTCGGCCACCCTGCGGCGTTGCCGACCGCCGCGGATCTGACCGAAGCGTTCCTGTGGT
CGGAGTTCCGGATAGTGACCAAAACCGCCACCGTCTCGCTGCATTCCAACACCTACCAGGTCGACCCCGCCCTGGTCGGG
CGCCGGGTGGAACTGGTGTTCTCCCCGTTCGACCTGCAGGCCATCGAGGTCCGCGACCAGGACAGAAGCTACGGCCAAGC
CATAGCCCACACGATCACCCGCCACGCCCACCCCAAAGCCCGACCCGAAATCAGCAGCCAGACACCGCCGGCAGCCACCG
GTATCGACTACCTGGCATTGACCGCCGCGGCCCACCATGAGCAGCTGCGCGATGACGAACGCATCGGCTACCACGCCCTC
TACGGCGCCCAGGCCACGGCCACCGATGACAATCAGCTTCCCGGTCAACTCGCGCTGCCCAGCCTCGATCACAAGGATGG
GGTGTCGGCATGA

Upstream 100 bases:

>100_bases
GGCCGTCAGCGGCGCTCGACTGTTGGCGCCTGGGTGGCCGCCGATGTCATCGGCGGTGCCGTGCAACACCAGTTGCCCCT
GACGCACAGTCAGGTGATCG

Downstream 100 bases:

>100_bases
GTATTCAACGACTGCAATCACATTGGGGCTTCTCGCGGATGCCGTTCGGACGCGATCTCGCGCCGTCGATGCTGCACCGC
CACCCCGGACACAGCGAAGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MILARAPARQTVSGGAIECEEGTAVSLEDHKRRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQV
QIARATLDRWIRRYRGGGFEALVPEPRRLATRTDVQVLELAASLKRENPARTAAQVARILRTATGWAPSESTLLRHFHRC
ELMGPAAGQSAEVFGRFEAPDPNELWVGDALHGPRVGDRKTYLFAFLDDHSRLVVGHRFGFAEDTVRLAAALKPALAARG
VPASIYVDNGSAFVDAWLLRACAKLGIRLVHSAPGRPQGRGKIERFFRTVREQFLVEVTDTTAEDLAAAGVDHAGALLEL
NRLFMAWVETEYHRRIHTETGQSPLARWEAGFDRLGHPAALPTAADLTEAFLWSEFRIVTKTATVSLHSNTYQVDPALVG
RRVELVFSPFDLQAIEVRDQDRSYGQAIAHTITRHAHPKARPEISSQTPPAATGIDYLALTAAAHHEQLRDDERIGYHAL
YGAQATATDDNQLPGQLALPSLDHKDGVSA

Sequences:

>Translated_510_residues
MILARAPARQTVSGGAIECEEGTAVSLEDHKRRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQV
QIARATLDRWIRRYRGGGFEALVPEPRRLATRTDVQVLELAASLKRENPARTAAQVARILRTATGWAPSESTLLRHFHRC
ELMGPAAGQSAEVFGRFEAPDPNELWVGDALHGPRVGDRKTYLFAFLDDHSRLVVGHRFGFAEDTVRLAAALKPALAARG
VPASIYVDNGSAFVDAWLLRACAKLGIRLVHSAPGRPQGRGKIERFFRTVREQFLVEVTDTTAEDLAAAGVDHAGALLEL
NRLFMAWVETEYHRRIHTETGQSPLARWEAGFDRLGHPAALPTAADLTEAFLWSEFRIVTKTATVSLHSNTYQVDPALVG
RRVELVFSPFDLQAIEVRDQDRSYGQAIAHTITRHAHPKARPEISSQTPPAATGIDYLALTAAAHHEQLRDDERIGYHAL
YGAQATATDDNQLPGQLALPSLDHKDGVSA
>Mature_510_residues
MILARAPARQTVSGGAIECEEGTAVSLEDHKRRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQV
QIARATLDRWIRRYRGGGFEALVPEPRRLATRTDVQVLELAASLKRENPARTAAQVARILRTATGWAPSESTLLRHFHRC
ELMGPAAGQSAEVFGRFEAPDPNELWVGDALHGPRVGDRKTYLFAFLDDHSRLVVGHRFGFAEDTVRLAAALKPALAARG
VPASIYVDNGSAFVDAWLLRACAKLGIRLVHSAPGRPQGRGKIERFFRTVREQFLVEVTDTTAEDLAAAGVDHAGALLEL
NRLFMAWVETEYHRRIHTETGQSPLARWEAGFDRLGHPAALPTAADLTEAFLWSEFRIVTKTATVSLHSNTYQVDPALVG
RRVELVFSPFDLQAIEVRDQDRSYGQAIAHTITRHAHPKARPEISSQTPPAATGIDYLALTAAAHHEQLRDDERIGYHAL
YGAQATATDDNQLPGQLALPSLDHKDGVSA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=282, Percent_Identity=28.3687943262411, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 56247; Mature: 56247

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILARAPARQTVSGGAIECEEGTAVSLEDHKRRERANAIGLFRYQVICPALEEGLSTRQR
CCCCCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHH
GRVVREIAGRRHIDPFGTQVQIARATLDRWIRRYRGGGFEALVPEPRRLATRTDVQVLEL
HHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHH
AASLKRENPARTAAQVARILRTATGWAPSESTLLRHFHRCELMGPAAGQSAEVFGRFEAP
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHEEECCCC
DPNELWVGDALHGPRVGDRKTYLFAFLDDHSRLVVGHRFGFAEDTVRLAAALKPALAARG
CCCCEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
VPASIYVDNGSAFVDAWLLRACAKLGIRLVHSAPGRPQGRGKIERFFRTVREQFLVEVTD
CCEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEECC
TTAEDLAAAGVDHAGALLELNRLFMAWVETEYHRRIHTETGQSPLARWEAGFDRLGHPAA
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
LPTAADLTEAFLWSEFRIVTKTATVSLHSNTYQVDPALVGRRVELVFSPFDLQAIEVRDQ
CCCHHHHHHHHHHHHEEEEEEEEEEEEECCCEEECHHHHCCEEEEEECCCCCEEEEECCC
DRSYGQAIAHTITRHAHPKARPEISSQTPPAATGIDYLALTAAAHHEQLRDDERIGYHAL
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
YGAQATATDDNQLPGQLALPSLDHKDGVSA
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MILARAPARQTVSGGAIECEEGTAVSLEDHKRRERANAIGLFRYQVICPALEEGLSTRQR
CCCCCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHH
GRVVREIAGRRHIDPFGTQVQIARATLDRWIRRYRGGGFEALVPEPRRLATRTDVQVLEL
HHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHH
AASLKRENPARTAAQVARILRTATGWAPSESTLLRHFHRCELMGPAAGQSAEVFGRFEAP
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHEEECCCC
DPNELWVGDALHGPRVGDRKTYLFAFLDDHSRLVVGHRFGFAEDTVRLAAALKPALAARG
CCCCEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
VPASIYVDNGSAFVDAWLLRACAKLGIRLVHSAPGRPQGRGKIERFFRTVREQFLVEVTD
CCEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEECC
TTAEDLAAAGVDHAGALLELNRLFMAWVETEYHRRIHTETGQSPLARWEAGFDRLGHPAA
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
LPTAADLTEAFLWSEFRIVTKTATVSLHSNTYQVDPALVGRRVELVFSPFDLQAIEVRDQ
CCCHHHHHHHHHHHHEEEEEEEEEEEEECCCEEECHHHHCCEEEEEECCCCCEEEEECCC
DRSYGQAIAHTITRHAHPKARPEISSQTPPAATGIDYLALTAAAHHEQLRDDERIGYHAL
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
YGAQATATDDNQLPGQLALPSLDHKDGVSA
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]