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The map label for this gene is atpD1 [H]

Identifier: 119776776

GI number: 119776776

Start: 4294701

End: 4296089

Strand: Reverse

Name: atpD1 [H]

Synonym: Sama_3644

Alternate gene names: 119776776

Gene position: 4296089-4294701 (Counterclockwise)

Preceding gene: 119776777

Following gene: 119776775

Centisome position: 99.77

GC content: 53.35

Gene sequence:

>1389_bases
ATGAGCACAGGTACTGTTGTCCAAGTAATTGGCGCGGTTGTGGACGTAGAGTTTCCACAGCATGCCGTACCTCAGGTATA
TGACGCTCTGAAGATCACAGGTGAAGGTACCTGTAACGGCCTGGTGCTGGAAGTTCAGCAGCAGCTCGGTGGCGGTGTGG
TTCGTACCATCGCCATGGGTTCTTCCGACGGTCTGCGTCGTGGTATCGAGGTTGAAAACACTGGTTCCGCTATTGCCGTT
CCTGTTGGTAAGGCCACTCTGGGTCGTATCATGAACGTGCTGGGCGAGCCTGTGGATGAAGCGGGTCCTATCGGTGAAGA
AGATCGTTATGTTATTCACCGTGCCGCTCCTTCCTATGAAGAGCAGTCAAACACAACTGAACTGCTGGAAACCGGTATCA
AGGTAATCGACCTGGTATGTCCATTCGCTAAGGGTGGTAAAGTAGGTCTGTTCGGTGGTGCGGGCGTTGGTAAGACAGTT
AACATGATGGAACTGATCAACAACATCGCCAAGGCCCACTCTGGTCTGTCAGTATTCGCCGGTGTAGGTGAGCGTACCCG
TGAAGGTAACGACTTCTACTACGAAATGATGGAATCAGGCGTACTGGACAAGGTAGCCATGGTGTACGGTCAGATGAACG
AGCCACCAGGAAACCGTCTGCGTGTGGCCCTGACCGGTCTGACCATGGCCGAGAAGTTCCGTGACGAGGGTAAAGACGTA
CTGTTGTTCGTAGACAACATCTACCGTTACACCCTGGCCGGTACCGAAGTATCAGCACTGCTGGGCCGTATGCCATCAGC
CGTAGGTTATCAGCCTACTCTGGCTGAGGAGATGGGCGTTCTGCAGGAGCGTATTACTTCTACCAAGACTGGTTCTATTA
CCTCCGTTCAGGCGGTATACGTACCAGCGGACGACTTGACCGACCCAAGCCCAGCGACCACCTTCGCCCACTTGGATGCG
ACCGTGGTACTGTCTCGTCAAATCGCTTCTCTGGGTATCTACCCAGCGGTTGACCCACTGGATTCCACCTCTCGTCAGTT
GGATCCACTGGTAGTTGGCCAGGAGCACTATGACGTGGCTAACGGCGTTCAAAACGTTCTGCAGCGCTACAAAGAGCTGA
AAGACATCATCGCCATCCTGGGTATGGACGAACTGTCAGACGACGACAAGATGACAGTATCCCGCGCCCGTAAGATTGAG
CGTTTCCTGTCTCAGCCTTTCCACGTAGCGGAAGTATTTACCGGTTCTCCTGGTAAGTACGTGCCTCTGAAAGACACTAT
CCGTGGCTTCAAGGGCATTCTGGAAGGTGAGTTCGACCACGTTCCAGAGCAAGCGTTCTACATGGTTGGCTCTGTCGACG
AAGCCGTTGAGAAAGCCAACAAGAAGTAA

Upstream 100 bases:

>100_bases
GCCCGTCAGGCTGCGATTACGCAGGAACTGTCGGAAATTGTTTCCGGTGCAGCAGCGGTTTAAGGCTTAGGTAACGAATA
CAAGTTTTAGAGGATTAATC

Downstream 100 bases:

>100_bases
TTCGGGCCCTGCCTGAGTCTTAAATGGAGAACGCTATGGCCATGACAGTACATCTTGATATCGTAAGTGCAGAAACTCGC
ATTTTTTCCGGTCTGGTAGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MSTGTVVQVIGAVVDVEFPQHAVPQVYDALKITGEGTCNGLVLEVQQQLGGGVVRTIAMGSSDGLRRGIEVENTGSAIAV
PVGKATLGRIMNVLGEPVDEAGPIGEEDRYVIHRAAPSYEEQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTV
NMMELINNIAKAHSGLSVFAGVGERTREGNDFYYEMMESGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDV
LLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDA
TVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIE
RFLSQPFHVAEVFTGSPGKYVPLKDTIRGFKGILEGEFDHVPEQAFYMVGSVDEAVEKANKK

Sequences:

>Translated_462_residues
MSTGTVVQVIGAVVDVEFPQHAVPQVYDALKITGEGTCNGLVLEVQQQLGGGVVRTIAMGSSDGLRRGIEVENTGSAIAV
PVGKATLGRIMNVLGEPVDEAGPIGEEDRYVIHRAAPSYEEQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTV
NMMELINNIAKAHSGLSVFAGVGERTREGNDFYYEMMESGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDV
LLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDA
TVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIE
RFLSQPFHVAEVFTGSPGKYVPLKDTIRGFKGILEGEFDHVPEQAFYMVGSVDEAVEKANKK
>Mature_461_residues
STGTVVQVIGAVVDVEFPQHAVPQVYDALKITGEGTCNGLVLEVQQQLGGGVVRTIAMGSSDGLRRGIEVENTGSAIAVP
VGKATLGRIMNVLGEPVDEAGPIGEEDRYVIHRAAPSYEEQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVN
MMELINNIAKAHSGLSVFAGVGERTREGNDFYYEMMESGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVL
LFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDAT
VVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVANGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIER
FLSQPFHVAEVFTGSPGKYVPLKDTIRGFKGILEGEFDHVPEQAFYMVGSVDEAVEKANKK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=467, Percent_Identity=70.0214132762313, Blast_Score=652, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=443, Percent_Identity=26.86230248307, Blast_Score=119, Evalue=9e-27,
Organism=Homo sapiens, GI19913426, Length=395, Percent_Identity=25.5696202531646, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI19913424, Length=322, Percent_Identity=28.2608695652174, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI50345984, Length=363, Percent_Identity=24.2424242424242, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI4757810, Length=363, Percent_Identity=24.2424242424242, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI1790170, Length=461, Percent_Identity=85.6832971800434, Blast_Score=806, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=347, Percent_Identity=29.3948126801153, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1790172, Length=432, Percent_Identity=25.2314814814815, Blast_Score=128, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI25144756, Length=467, Percent_Identity=67.4518201284797, Blast_Score=632, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=423, Percent_Identity=27.1867612293144, Blast_Score=124, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=352, Percent_Identity=27.2727272727273, Blast_Score=121, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=381, Percent_Identity=24.1469816272966, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=381, Percent_Identity=24.1469816272966, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=342, Percent_Identity=23.0994152046784, Blast_Score=88, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=69.1973969631237, Blast_Score=635, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=426, Percent_Identity=25.8215962441315, Blast_Score=119, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25.8152173913043, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=27.8969957081545, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24638766, Length=466, Percent_Identity=67.8111587982833, Blast_Score=632, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=63.8709677419355, Blast_Score=589, Evalue=1e-168,
Organism=Drosophila melanogaster, GI281361666, Length=429, Percent_Identity=26.8065268065268, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24646341, Length=429, Percent_Identity=26.8065268065268, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI17136796, Length=429, Percent_Identity=26.8065268065268, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI20129479, Length=322, Percent_Identity=27.3291925465839, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24583992, Length=331, Percent_Identity=26.8882175226586, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24583988, Length=361, Percent_Identity=25.4847645429363, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583986, Length=361, Percent_Identity=25.4847645429363, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583984, Length=361, Percent_Identity=25.4847645429363, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24658560, Length=381, Percent_Identity=23.8845144356955, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=50, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49735; Mature: 49604

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGTVVQVIGAVVDVEFPQHAVPQVYDALKITGEGTCNGLVLEVQQQLGGGVVRTIAMG
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCEEEEEECC
SSDGLRRGIEVENTGSAIAVPVGKATLGRIMNVLGEPVDEAGPIGEEDRYVIHRAAPSYE
CCCHHHCCCEEECCCCEEEEECCHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCC
EQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFA
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEC
GVGERTREGNDFYYEMMESGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDV
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEE
LLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVY
EEEEECHHEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE
VPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVA
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHH
NGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIERFLSQPFHVAEVFTGSPGKY
HHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEEECCCCCC
VPLKDTIRGFKGILEGEFDHVPEQAFYMVGSVDEAVEKANKK
CCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
STGTVVQVIGAVVDVEFPQHAVPQVYDALKITGEGTCNGLVLEVQQQLGGGVVRTIAMG
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCEEEEEECC
SSDGLRRGIEVENTGSAIAVPVGKATLGRIMNVLGEPVDEAGPIGEEDRYVIHRAAPSYE
CCCHHHCCCEEECCCCEEEEECCHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCC
EQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFA
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEC
GVGERTREGNDFYYEMMESGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDV
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEE
LLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVY
EEEEECHHEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE
VPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVA
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEECCHHHHHH
NGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIERFLSQPFHVAEVFTGSPGKY
HHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEHEEECCCCCC
VPLKDTIRGFKGILEGEFDHVPEQAFYMVGSVDEAVEKANKK
CCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA