Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776760

Identifier: 119776760

GI number: 119776760

Start: 4271577

End: 4273184

Strand: Direct

Name: 119776760

Synonym: Sama_3628

Alternate gene names: NA

Gene position: 4271577-4273184 (Clockwise)

Preceding gene: 119776755

Following gene: 119776761

Centisome position: 99.2

GC content: 56.34

Gene sequence:

>1608_bases
ATGGTAAATAACGAAATGGTCGCTGCTCATTTAGCTGGCAACTGGTATACTACAGCGTTTTTCACACCGCACCGGAAATC
CATGTTCTATCTGCTTGCCAGCTGCATCGCCCTTCTCCTGGGCCCTCTGTGTTATCGCCTGATTGCCAACGGCAATGGGC
TGCAGAAGGGGCTGGATGGCTTTATCTTTGTTTCTCTCGGTGGTCTGGTGCTTATCCACATCTTGCCCGAGCTGCTGGCC
CACGGTGGTGTGCTGTCACTGCTGTTTGTGGTGCTGGGCCTTTGGGGCCCCACTGCCAGTGAAAAATTATTTCATCGCTA
TTCCGAATTGACCCATAACCTGACCCTGGTATTGGGGATCGGCGGCCTGATGCTGCATACCATCACAGATGGTGGTGCCA
TGGTGCTGGCAAGTCAGGGCAATGGCACTGCACTGCTGGCTCTGGGTGTGGTATTGCACCGGCTACCAGTGGGGCTGGCC
ATCTGGTGGCTGCTCAAGCCACAAATAGGCGCTCGCTGGACACTGGCCATACTGCTTAGCATGATGCTGCTGACTGCATT
GGGATACTTTGGCGGCGCCCATATCATCGAACAGCTGAGCCTCGAGAACACCGTTTATCTGCAAGCCTTTGTCACCGGCT
CCATATTGCACGTGGTGTTGCATCAACCCCATGGTGAGTCATCAAACGATGACAATCGCCACGAATATCAGGCCGGTATC
GGCAGCTTGCTGGGTATGGCACTGTTGTTTGTGCTGCTGGCAGTGGCTGATGGTGGCCATGAACACGAACATCACGGCAG
CGACCAACTGCTGCATTGGCTGATGCAGCTTTCGCCAGCAATCTTATTGGCTTACGCCGTTGCTGCACTCAGGTTTCGAT
TCGGGATACAGCCGGGCACATCCAATAACGCTTTGGCCTGGCTGCAACGCCTCGCCGGGCCCGAAGCTCTGGTGTTGACA
GCCTGGATGCTTGGCCCTGTTTACGCACTGGCGCAGGCCGTGGGGTTATTGCTGCTCGGCACTGTGTTCAGCACAGCAGA
GGTTAAGCCTGTTGATCCCCACGGGAAAATCCCCAATAAGGCATTGGTGTTTGGATTCAGCCATCTGGTCGACCGCAGTG
CGCCCTGGGTGCTGCTGAGCCTGGTGCTCGCCAATCTTATCGGTCATCCATCTGTTCCTCTGGCCAATCCCTGGCTGCAG
GCAGCTGTGCTGGTCGTGGTGCTCTTGCCCATGCGTTTTTGTAATTTGGGGGGCGCCGTCCTTGCCATGTCGCTGGCATT
CAGTGGCTGGTCAGCACCGGCTGTGTTACTCGCCTTGCTGGCAGCGCCCTGGTTAAGCCTGAGACAACTGTCTGTCATGT
CCCTTCCCGTTAAGGTGGGTGCACTGGCATTGCTTGGGGCTCTTCTGGCTGTCGGCGCAAAATTGGCACCAGAGGCATCG
CCGCTGTTCCATCTGCCACACGATTTGGAATGGGTCGCCATGGCACTGCTGGCACTGCTGTTTGCGGCCAGCCTGCTGCG
CCTTGGTCCACGTAAATTTTTGCGTCGTTTATGGCATGGACGCGAGGCCAAAGCTCATCATCACCCACATGGGCATCACC
ATCACTGA

Upstream 100 bases:

>100_bases
GAGCCCCTTCATAAATCCATTCACAACGGTCAAGTGAACGGCTATTGGCGTAGCTGCCTGCCAGAAGAGACTCACGGCGC
GGCGAAAGTGACTCTACACA

Downstream 100 bases:

>100_bases
CACTGAAAAGACTGTTCAAAGCGGGCAATGCTGGTTAGGCTGACTGAAATCATCGACTGACCATCATTGCCTATGTGCAT
TCTTTTTATGGCCCTTGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDGFIFVSLGGLVLIHILPELLA
HGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGIGGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLA
IWWLLKPQIGARWTLAILLSMMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI
GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGTSNNALAWLQRLAGPEALVLT
AWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNKALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQ
AAVLVVVLLPMRFCNLGGAVLAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS
PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH

Sequences:

>Translated_535_residues
MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDGFIFVSLGGLVLIHILPELLA
HGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGIGGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLA
IWWLLKPQIGARWTLAILLSMMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI
GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGTSNNALAWLQRLAGPEALVLT
AWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNKALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQ
AAVLVVVLLPMRFCNLGGAVLAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS
PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH
>Mature_535_residues
MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDGFIFVSLGGLVLIHILPELLA
HGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGIGGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLA
IWWLLKPQIGARWTLAILLSMMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI
GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGTSNNALAWLQRLAGPEALVLT
AWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNKALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQ
AAVLVVVLLPMRFCNLGGAVLAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS
PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57514; Mature: 57514

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDG
CCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
FIFVSLGGLVLIHILPELLAHGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGI
EEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHEEEC
GGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLAIWWLLKPQIGARWTLAILLS
CHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGT
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SNNALAWLQRLAGPEALVLTAWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
ALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQAAVLVVVLLPMRFCNLGGAV
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
LAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH
CCEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDG
CCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
FIFVSLGGLVLIHILPELLAHGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGI
EEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHEEEC
GGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLAIWWLLKPQIGARWTLAILLS
CHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGT
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SNNALAWLQRLAGPEALVLTAWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
ALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQAAVLVVVLLPMRFCNLGGAV
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
LAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH
CCEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA