| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776760
Identifier: 119776760
GI number: 119776760
Start: 4271577
End: 4273184
Strand: Direct
Name: 119776760
Synonym: Sama_3628
Alternate gene names: NA
Gene position: 4271577-4273184 (Clockwise)
Preceding gene: 119776755
Following gene: 119776761
Centisome position: 99.2
GC content: 56.34
Gene sequence:
>1608_bases ATGGTAAATAACGAAATGGTCGCTGCTCATTTAGCTGGCAACTGGTATACTACAGCGTTTTTCACACCGCACCGGAAATC CATGTTCTATCTGCTTGCCAGCTGCATCGCCCTTCTCCTGGGCCCTCTGTGTTATCGCCTGATTGCCAACGGCAATGGGC TGCAGAAGGGGCTGGATGGCTTTATCTTTGTTTCTCTCGGTGGTCTGGTGCTTATCCACATCTTGCCCGAGCTGCTGGCC CACGGTGGTGTGCTGTCACTGCTGTTTGTGGTGCTGGGCCTTTGGGGCCCCACTGCCAGTGAAAAATTATTTCATCGCTA TTCCGAATTGACCCATAACCTGACCCTGGTATTGGGGATCGGCGGCCTGATGCTGCATACCATCACAGATGGTGGTGCCA TGGTGCTGGCAAGTCAGGGCAATGGCACTGCACTGCTGGCTCTGGGTGTGGTATTGCACCGGCTACCAGTGGGGCTGGCC ATCTGGTGGCTGCTCAAGCCACAAATAGGCGCTCGCTGGACACTGGCCATACTGCTTAGCATGATGCTGCTGACTGCATT GGGATACTTTGGCGGCGCCCATATCATCGAACAGCTGAGCCTCGAGAACACCGTTTATCTGCAAGCCTTTGTCACCGGCT CCATATTGCACGTGGTGTTGCATCAACCCCATGGTGAGTCATCAAACGATGACAATCGCCACGAATATCAGGCCGGTATC GGCAGCTTGCTGGGTATGGCACTGTTGTTTGTGCTGCTGGCAGTGGCTGATGGTGGCCATGAACACGAACATCACGGCAG CGACCAACTGCTGCATTGGCTGATGCAGCTTTCGCCAGCAATCTTATTGGCTTACGCCGTTGCTGCACTCAGGTTTCGAT TCGGGATACAGCCGGGCACATCCAATAACGCTTTGGCCTGGCTGCAACGCCTCGCCGGGCCCGAAGCTCTGGTGTTGACA GCCTGGATGCTTGGCCCTGTTTACGCACTGGCGCAGGCCGTGGGGTTATTGCTGCTCGGCACTGTGTTCAGCACAGCAGA GGTTAAGCCTGTTGATCCCCACGGGAAAATCCCCAATAAGGCATTGGTGTTTGGATTCAGCCATCTGGTCGACCGCAGTG CGCCCTGGGTGCTGCTGAGCCTGGTGCTCGCCAATCTTATCGGTCATCCATCTGTTCCTCTGGCCAATCCCTGGCTGCAG GCAGCTGTGCTGGTCGTGGTGCTCTTGCCCATGCGTTTTTGTAATTTGGGGGGCGCCGTCCTTGCCATGTCGCTGGCATT CAGTGGCTGGTCAGCACCGGCTGTGTTACTCGCCTTGCTGGCAGCGCCCTGGTTAAGCCTGAGACAACTGTCTGTCATGT CCCTTCCCGTTAAGGTGGGTGCACTGGCATTGCTTGGGGCTCTTCTGGCTGTCGGCGCAAAATTGGCACCAGAGGCATCG CCGCTGTTCCATCTGCCACACGATTTGGAATGGGTCGCCATGGCACTGCTGGCACTGCTGTTTGCGGCCAGCCTGCTGCG CCTTGGTCCACGTAAATTTTTGCGTCGTTTATGGCATGGACGCGAGGCCAAAGCTCATCATCACCCACATGGGCATCACC ATCACTGA
Upstream 100 bases:
>100_bases GAGCCCCTTCATAAATCCATTCACAACGGTCAAGTGAACGGCTATTGGCGTAGCTGCCTGCCAGAAGAGACTCACGGCGC GGCGAAAGTGACTCTACACA
Downstream 100 bases:
>100_bases CACTGAAAAGACTGTTCAAAGCGGGCAATGCTGGTTAGGCTGACTGAAATCATCGACTGACCATCATTGCCTATGTGCAT TCTTTTTATGGCCCTTGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDGFIFVSLGGLVLIHILPELLA HGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGIGGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLA IWWLLKPQIGARWTLAILLSMMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGTSNNALAWLQRLAGPEALVLT AWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNKALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQ AAVLVVVLLPMRFCNLGGAVLAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH
Sequences:
>Translated_535_residues MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDGFIFVSLGGLVLIHILPELLA HGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGIGGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLA IWWLLKPQIGARWTLAILLSMMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGTSNNALAWLQRLAGPEALVLT AWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNKALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQ AAVLVVVLLPMRFCNLGGAVLAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH >Mature_535_residues MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDGFIFVSLGGLVLIHILPELLA HGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGIGGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLA IWWLLKPQIGARWTLAILLSMMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGTSNNALAWLQRLAGPEALVLT AWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNKALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQ AAVLVVVLLPMRFCNLGGAVLAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57514; Mature: 57514
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDG CCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC FIFVSLGGLVLIHILPELLAHGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGI EEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHEEEC GGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLAIWWLLKPQIGARWTLAILLS CHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH MMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGT HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SNNALAWLQRLAGPEALVLTAWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNK CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH ALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQAAVLVVVLLPMRFCNLGGAV HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH LAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH CCEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVNNEMVAAHLAGNWYTTAFFTPHRKSMFYLLASCIALLLGPLCYRLIANGNGLQKGLDG CCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC FIFVSLGGLVLIHILPELLAHGGVLSLLFVVLGLWGPTASEKLFHRYSELTHNLTLVLGI EEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHEEEC GGLMLHTITDGGAMVLASQGNGTALLALGVVLHRLPVGLAIWWLLKPQIGARWTLAILLS CHHHHEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH MMLLTALGYFGGAHIIEQLSLENTVYLQAFVTGSILHVVLHQPHGESSNDDNRHEYQAGI HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH GSLLGMALLFVLLAVADGGHEHEHHGSDQLLHWLMQLSPAILLAYAVAALRFRFGIQPGT HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SNNALAWLQRLAGPEALVLTAWMLGPVYALAQAVGLLLLGTVFSTAEVKPVDPHGKIPNK CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH ALVFGFSHLVDRSAPWVLLSLVLANLIGHPSVPLANPWLQAAVLVVVLLPMRFCNLGGAV HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH LAMSLAFSGWSAPAVLLALLAAPWLSLRQLSVMSLPVKVGALALLGALLAVGAKLAPEAS HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC PLFHLPHDLEWVAMALLALLFAASLLRLGPRKFLRRLWHGREAKAHHHPHGHHHH CCEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA