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The map label for this gene is fdnI [C]

Identifier: 119776739

GI number: 119776739

Start: 4245135

End: 4246106

Strand: Reverse

Name: fdnI [C]

Synonym: Sama_3607

Alternate gene names: 119776739

Gene position: 4246106-4245135 (Counterclockwise)

Preceding gene: 119776740

Following gene: 119776737

Centisome position: 98.61

GC content: 54.73

Gene sequence:

>972_bases
ATGAACAATTGGTTCAAAATCCTGGCCGTGGCTGTGCTACTCATGCTGGGGATGGGGCTTGGCCATGCGGCCGACGCCAA
CGCCCAACTGGGGGATGCCCAGATGTGGGCCGAGCTGAAAGATGGCGCTGTGGGTTACACCACCTCGACCAGTGAGTTTC
ATGGTCAGCCTATCAATACCTACGATCCCAGACTGCTGGAGGCGCGCGGCACCTGGTTGGCGCCGGGGCTGATGGCGGCA
CTGTTTGGCATGATAGTGGTGTTTGCCCTGTTCATCATGGTCAATGGTATCTCCAGGTTGCACCATGGTTTTTCGGGCAA
GATGGTGTATCGCTGGTCCAAGCTGGATGTAAGCATTCACTGGCTGGGCGCCATTCCCTGCTTGCTGCTGATCCTCACAG
GTTTGGTACTGCTGGCAGGCCGCTTCTTCTTCCAACCCTGGCTGGGTGAAGGCGTGTGGGCCGGTCTGGTGTATGCTGCC
AAGCAGGTGCACGATGTCATGGCCATTCCATTTATGATTGGCTGGGCACTGATGACCCTGATGTGGGCCAAAAATCAGCT
GCCGAAAATGTACGACATCAAGTGGTTTATGGTGGTGGGTGGCTATATCAACTTTGGCCCCTTCAAGAATCAGCATCCCG
ATGCCGGCTTTGCCAACGCCGGTGAGAAGATGTGGTTCTGGACCTTTGCCCTGTTCGGGCTGGTGATCTCTGCTTCCGGT
ATGTTGTTGCTGTTCCCTAATCTGTTCGAGCCAAGCCGCACCCTTAGCCTGACCGCGCTGATCCTGCACGGCATCAGCGC
CATCATTATTTGTGCCTTCTCCATAGTGCACATCTTTATGGCGACCGTGATGTCTGAGGGCGGTATGGAGTGTATGGTGT
CGGGCTACTGTGATGAGAACTGGGCTACGCAGCATCACAACCTGTGGTTTGATGAAATCAAAGCTAACGGTACTTTGAAG
TATAAGGACTAA

Upstream 100 bases:

>100_bases
GCATCTTCCGTGAGCGCGTCGCCTATCGTGGTGCCGACAACGGTGCCTGGAAGTAACTACAGCCAGGGGGCGGCCTGTTC
GCCCCCAACGGAGGTTAACA

Downstream 100 bases:

>100_bases
GTCCTTAACCTTTAGGTACACAAAAACCCTGCATTAACATGCGGGGTTTTTTATTGCCTGTCGGCAATTGGGAATGATCG
TTTTGGTGGGCAGCCACACT

Product: formate dehydrogenase subunit C

Products: CO2; NADH

Alternate protein names: Formate Dehydrogenase Cytochrome; Formate Dehydrogenase Subunit Gamma; Formate Dehydrogenase Subunit C; Formate Dehydrogenase Cytochrome B Subunit; Formate Dehydrogenase C Subunit; Formate Dehydrogenase; Formate Dehydrogenase-N; Cytochrome B Subunit Of Formate Dehydrogenase; Formate Dehydrogenase Subunit C FdnI; Cytochrome; Formate Dehydrogenase Cytochrome C Subunit Gamma Subunit; Formate Dehydrogenase N Gamma Subunit

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNNWFKILAVAVLLMLGMGLGHAADANAQLGDAQMWAELKDGAVGYTTSTSEFHGQPINTYDPRLLEARGTWLAPGLMAA
LFGMIVVFALFIMVNGISRLHHGFSGKMVYRWSKLDVSIHWLGAIPCLLLILTGLVLLAGRFFFQPWLGEGVWAGLVYAA
KQVHDVMAIPFMIGWALMTLMWAKNQLPKMYDIKWFMVVGGYINFGPFKNQHPDAGFANAGEKMWFWTFALFGLVISASG
MLLLFPNLFEPSRTLSLTALILHGISAIIICAFSIVHIFMATVMSEGGMECMVSGYCDENWATQHHNLWFDEIKANGTLK
YKD

Sequences:

>Translated_323_residues
MNNWFKILAVAVLLMLGMGLGHAADANAQLGDAQMWAELKDGAVGYTTSTSEFHGQPINTYDPRLLEARGTWLAPGLMAA
LFGMIVVFALFIMVNGISRLHHGFSGKMVYRWSKLDVSIHWLGAIPCLLLILTGLVLLAGRFFFQPWLGEGVWAGLVYAA
KQVHDVMAIPFMIGWALMTLMWAKNQLPKMYDIKWFMVVGGYINFGPFKNQHPDAGFANAGEKMWFWTFALFGLVISASG
MLLLFPNLFEPSRTLSLTALILHGISAIIICAFSIVHIFMATVMSEGGMECMVSGYCDENWATQHHNLWFDEIKANGTLK
YKD
>Mature_323_residues
MNNWFKILAVAVLLMLGMGLGHAADANAQLGDAQMWAELKDGAVGYTTSTSEFHGQPINTYDPRLLEARGTWLAPGLMAA
LFGMIVVFALFIMVNGISRLHHGFSGKMVYRWSKLDVSIHWLGAIPCLLLILTGLVLLAGRFFFQPWLGEGVWAGLVYAA
KQVHDVMAIPFMIGWALMTLMWAKNQLPKMYDIKWFMVVGGYINFGPFKNQHPDAGFANAGEKMWFWTFALFGLVISASG
MLLLFPNLFEPSRTLSLTALILHGISAIIICAFSIVHIFMATVMSEGGMECMVSGYCDENWATQHHNLWFDEIKANGTLK
YKD

Specific function: Formate Dehydrogenase Allows E. coli To Use Formate As Major Electron Donor During Anaerobic Respiration, When Nitrate Is Used As Electron Acceptor. Subunit Gamma Is The Cytochrome B556(Fdn) Component Of The Formate Dehydrogenase. [C]

COG id: COG2864

COG function: function code C; Cytochrome b subunit of formate dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787750, Length=225, Percent_Identity=24.8888888888889, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790325, Length=214, Percent_Identity=24.2990654205607, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.2.1.2

Molecular weight: Translated: 35942; Mature: 35942

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNWFKILAVAVLLMLGMGLGHAADANAQLGDAQMWAELKDGAVGYTTSTSEFHGQPINT
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCHHHCCCCCCC
YDPRLLEARGTWLAPGLMAALFGMIVVFALFIMVNGISRLHHGFSGKMVYRWSKLDVSIH
CCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEE
WLGAIPCLLLILTGLVLLAGRFFFQPWLGEGVWAGLVYAAKQVHDVMAIPFMIGWALMTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MWAKNQLPKMYDIKWFMVVGGYINFGPFKNQHPDAGFANAGEKMWFWTFALFGLVISASG
HHHHHCCCCHHCCEEEEEECCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
MLLLFPNLFEPSRTLSLTALILHGISAIIICAFSIVHIFMATVMSEGGMECMVSGYCDEN
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
WATQHHNLWFDEIKANGTLKYKD
CCCCCCCCCHHHHCCCCEEEECC
>Mature Secondary Structure
MNNWFKILAVAVLLMLGMGLGHAADANAQLGDAQMWAELKDGAVGYTTSTSEFHGQPINT
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCHHHCCCCCCC
YDPRLLEARGTWLAPGLMAALFGMIVVFALFIMVNGISRLHHGFSGKMVYRWSKLDVSIH
CCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEE
WLGAIPCLLLILTGLVLLAGRFFFQPWLGEGVWAGLVYAAKQVHDVMAIPFMIGWALMTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MWAKNQLPKMYDIKWFMVVGGYINFGPFKNQHPDAGFANAGEKMWFWTFALFGLVISASG
HHHHHCCCCHHCCEEEEEECCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
MLLLFPNLFEPSRTLSLTALILHGISAIIICAFSIVHIFMATVMSEGGMECMVSGYCDEN
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
WATQHHNLWFDEIKANGTLKYKD
CCCCCCCCCHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA