| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776710
Identifier: 119776710
GI number: 119776710
Start: 4214486
End: 4214698
Strand: Direct
Name: 119776710
Synonym: Sama_3578
Alternate gene names: NA
Gene position: 4214486-4214698 (Clockwise)
Preceding gene: 119776709
Following gene: 119776711
Centisome position: 97.87
GC content: 57.75
Gene sequence:
>213_bases ATGGATAAGTTAACCGCCGTCACCCTGATCATGGTGGCCGCTTTCGCAGCCCAGGTACTGACCAGTTATTTTCGAAGCCA GCGCACTCGCGTCCCAAGCAACATGAAAGCCCTGTCCGATGAAAATACCGACCTAAAGGCCCGTATCGCAGCGCTGGAGG CCATAGTGACCGACCCCGGCTACGAGCTGAAGCGGGAAATCGCCCGCCTGTAG
Upstream 100 bases:
>100_bases AAAGGTGGTGTTTGGTCTGTAATGGCCAACACCCCAGGTTGCCGGGGAGCTTCCCCGGCAATAACCACAGATAACACTTT AAATATCAAGGAGACACCTT
Downstream 100 bases:
>100_bases TCCAAGCGGCGGTCAATACTCCCCCGGGCATAAAGGCGCATCAGTTGCAAGGACCGTTCAGGCGCGTCAGGCGCCAAGTG GTGGCCTCTGGCCTGGAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 70; Mature: 70
Protein sequence:
>70_residues MDKLTAVTLIMVAAFAAQVLTSYFRSQRTRVPSNMKALSDENTDLKARIAALEAIVTDPGYELKREIARL
Sequences:
>Translated_70_residues MDKLTAVTLIMVAAFAAQVLTSYFRSQRTRVPSNMKALSDENTDLKARIAALEAIVTDPGYELKREIARL >Mature_70_residues MDKLTAVTLIMVAAFAAQVLTSYFRSQRTRVPSNMKALSDENTDLKARIAALEAIVTDPGYELKREIARL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7785; Mature: 7785
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLTAVTLIMVAAFAAQVLTSYFRSQRTRVPSNMKALSDENTDLKARIAALEAIVTDPG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCC YELKREIARL HHHHHHHHCC >Mature Secondary Structure MDKLTAVTLIMVAAFAAQVLTSYFRSQRTRVPSNMKALSDENTDLKARIAALEAIVTDPG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCC YELKREIARL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA