BacMap

Definition	Shewanella amazonensis SB2B chromosome, complete genome.
Accession	NC_008700
Length	4,306,142

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The map label for this gene is ytrB [H]

Identifier: 119776705

GI number: 119776705

Start: 4209687

End: 4210541

Strand: Reverse

Name: ytrB [H]

Synonym: Sama_3573

Alternate gene names: 119776705

Gene position: 4210541-4209687 (Counterclockwise)

Preceding gene: 119776706

Following gene: 119776704

Centisome position: 97.78

GC content: 58.25

Gene sequence:

>855_bases
ATGGACATGGAACTGATGAACGATGGCCCGCTGCTTGAAATCCGGGGACTGAAAAAACGCTTCGGTGACAAGACGGCGTT
GAATGGCGTGGATCTCACCCTGGAAAGCGGCATGGTGGTGGGTTTGCTGGGGGAAAATGGTGCCGGTAAATCTACCTTGA
TGCGCTGTATCCTGGGTCTGATTGATGCCGACGAAGGTGAAATCTGCACCCTGGGGCAAGCGCCTTCCACCCTCTCGGCC
AGTACCAAGGCCCGCATCGGTTATGTGCCGCAGCAACATTATGGCTACGAAGGCTTCAGTGTTGAGCGGGCGCTGTCGCT
CCATGCCAGCTTTTATCCAGACTGGGATCCAAAGCTTGAGCAGAGTTGGATGAAACGTTTTGGTCTTGACCCCAAGGCGC
AGGTGAATCGCCTCAGCGTGGGGCAACGCCAGTCTCTCGCCATCATCATGGCTATGGCCTACCGTCCAAGCCTGTTGGTG
CTCGATGAGCCGGTGGCGAGCCTCGATCCCTCTGCCCGTCGTCGCTTTATGGGCGACCTGTTTGAACTGGCGTTGGAGTC
GGGCTCGGCGGTGATTTTCTCTTCCCACATTACGTCGGATCTGGAGCGGGTGGCCAGCCATGTGGCGCTGCTCAAAGACG
GGCAGTTGCTTATCATGGGCGAGCTGGACGCCGTGCGTGAATCGGTACGCTTGCTGACGCTGGCTGAGGGCAGCCAGTTG
CCGGATGCATACCGGGTACTTGGGCGACAGGGTAACCGAGTGCTGGTGGATGGCTTTCGCGGTGAATCCTTCCCCGGTCT
GCTGGGTGTGGACACTGTGAATCTGGAGCAGCTCTTTATGGAGCTGCACCCATGA

Upstream 100 bases:

>100_bases
CCTGAGCTGGAAAAGCTCTGTCAGCAGGCGCGGCAACTGGGCGTAGACCTTGATGAACTTAAATCTCTGCTCGACAGCAT
CTGGCAATGAGGCCTGAAGG

Downstream 100 bases:

>100_bases
GAGCCCTGACAAGCTTTTGGTCGCTCTGGTGCAAAGATGTTGGCAGCGCCAGCTTTATTGGCATGGGGGCCCTGTTTGCT
GTGGTGTTTGTGCCCATGGC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MDMELMNDGPLLEIRGLKKRFGDKTALNGVDLTLESGMVVGLLGENGAGKSTLMRCILGLIDADEGEICTLGQAPSTLSA
STKARIGYVPQQHYGYEGFSVERALSLHASFYPDWDPKLEQSWMKRFGLDPKAQVNRLSVGQRQSLAIIMAMAYRPSLLV
LDEPVASLDPSARRRFMGDLFELALESGSAVIFSSHITSDLERVASHVALLKDGQLLIMGELDAVRESVRLLTLAEGSQL
PDAYRVLGRQGNRVLVDGFRGESFPGLLGVDTVNLEQLFMELHP

Sequences:

>Translated_284_residues
MDMELMNDGPLLEIRGLKKRFGDKTALNGVDLTLESGMVVGLLGENGAGKSTLMRCILGLIDADEGEICTLGQAPSTLSA
STKARIGYVPQQHYGYEGFSVERALSLHASFYPDWDPKLEQSWMKRFGLDPKAQVNRLSVGQRQSLAIIMAMAYRPSLLV
LDEPVASLDPSARRRFMGDLFELALESGSAVIFSSHITSDLERVASHVALLKDGQLLIMGELDAVRESVRLLTLAEGSQL
PDAYRVLGRQGNRVLVDGFRGESFPGLLGVDTVNLEQLFMELHP
>Mature_284_residues
MDMELMNDGPLLEIRGLKKRFGDKTALNGVDLTLESGMVVGLLGENGAGKSTLMRCILGLIDADEGEICTLGQAPSTLSA
STKARIGYVPQQHYGYEGFSVERALSLHASFYPDWDPKLEQSWMKRFGLDPKAQVNRLSVGQRQSLAIIMAMAYRPSLLV
LDEPVASLDPSARRRFMGDLFELALESGSAVIFSSHITSDLERVASHVALLKDGQLLIMGELDAVRESVRLLTLAEGSQL
PDAYRVLGRQGNRVLVDGFRGESFPGLLGVDTVNLEQLFMELHP

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=220, Percent_Identity=26.8181818181818, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27881501, Length=207, Percent_Identity=27.536231884058, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI153792144, Length=221, Percent_Identity=28.9592760180996, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI30795238, Length=207, Percent_Identity=27.536231884058, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI150417984, Length=221, Percent_Identity=28.9592760180996, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI31657092, Length=233, Percent_Identity=27.4678111587983, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI27262624, Length=220, Percent_Identity=29.0909090909091, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI27262626, Length=220, Percent_Identity=29.0909090909091, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI116734710, Length=244, Percent_Identity=28.6885245901639, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=28.7037037037037, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=28.7037037037037, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI105990541, Length=227, Percent_Identity=26.431718061674, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27477115, Length=220, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI6005701, Length=217, Percent_Identity=23.5023041474654, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI27436953, Length=211, Percent_Identity=23.2227488151659, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=214, Percent_Identity=32.7102803738318, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI87081782, Length=231, Percent_Identity=32.4675324675325, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI48995001, Length=223, Percent_Identity=31.390134529148, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786319, Length=247, Percent_Identity=29.5546558704453, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787792, Length=220, Percent_Identity=30.4545454545455, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=29.7413793103448, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788472, Length=221, Percent_Identity=29.4117647058824, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693107, Length=254, Percent_Identity=30.7086614173228, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=29.6803652968037, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786398, Length=230, Percent_Identity=32.6086956521739, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790190, Length=245, Percent_Identity=26.1224489795918, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=30.3738317757009, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=34.3915343915344, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788225, Length=230, Percent_Identity=29.1304347826087, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=29.7674418604651, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=27.1889400921659, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788897, Length=223, Percent_Identity=30.9417040358744, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790544, Length=235, Percent_Identity=30.6382978723404, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=26.605504587156, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790525, Length=258, Percent_Identity=27.1317829457364, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789593, Length=219, Percent_Identity=29.6803652968037, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787547, Length=241, Percent_Identity=26.5560165975104, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789962, Length=244, Percent_Identity=28.6885245901639, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788210, Length=223, Percent_Identity=27.8026905829596, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786975, Length=217, Percent_Identity=29.9539170506912, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=28.6343612334802, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=26.7241379310345, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=27.7272727272727, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=24.0909090909091, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786803, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=242, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786698, Length=217, Percent_Identity=24.4239631336406, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786872, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789751, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788540, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787041, Length=204, Percent_Identity=29.9019607843137, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790467, Length=219, Percent_Identity=24.6575342465753, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082268, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=27.6497695852535, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=229, Percent_Identity=26.6375545851528, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115533608, Length=223, Percent_Identity=29.1479820627803, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71983510, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17565586, Length=252, Percent_Identity=26.1904761904762, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324585, Length=209, Percent_Identity=31.1004784688995, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322177, Length=199, Percent_Identity=30.6532663316583, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582014, Length=252, Percent_Identity=29.7619047619048, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24582012, Length=252, Percent_Identity=29.7619047619048, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24650853, Length=220, Percent_Identity=31.3636363636364, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24650855, Length=220, Percent_Identity=31.3636363636364, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281362751, Length=235, Percent_Identity=29.7872340425532, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24666092, Length=226, Percent_Identity=29.646017699115, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28574150, Length=232, Percent_Identity=27.5862068965517, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007328, Length=232, Percent_Identity=27.5862068965517, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24643674, Length=214, Percent_Identity=27.1028037383178, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI85725262, Length=223, Percent_Identity=29.1479820627803, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI221512771, Length=237, Percent_Identity=26.5822784810127, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648314, Length=221, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28573573, Length=223, Percent_Identity=26.9058295964126, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28573571, Length=223, Percent_Identity=26.9058295964126, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007184, Length=242, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221500365, Length=242, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31079; Mature: 31079

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMELMNDGPLLEIRGLKKRFGDKTALNGVDLTLESGMVVGLLGENGAGKSTLMRCILGL
CCCCCCCCCCEEEEECHHHHCCCCHHCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
IDADEGEICTLGQAPSTLSASTKARIGYVPQQHYGYEGFSVERALSLHASFYPDWDPKLE
HCCCCCCEEECCCCCCCCCCCCCCEECCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCHHH
QSWMKRFGLDPKAQVNRLSVGQRQSLAIIMAMAYRPSLLVLDEPVASLDPSARRRFMGDL
HHHHHHHCCCCHHHHHHCCCCCCHHHHEEEEHHCCCCEEEEECCHHHCCHHHHHHHHHHH
FELALESGSAVIFSSHITSDLERVASHVALLKDGQLLIMGELDAVRESVRLLTLAEGSQL
HHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHEEEEECCCCC
PDAYRVLGRQGNRVLVDGFRGESFPGLLGVDTVNLEQLFMELHP
CHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCHHHHHHHCCC
>Mature Secondary Structure
MDMELMNDGPLLEIRGLKKRFGDKTALNGVDLTLESGMVVGLLGENGAGKSTLMRCILGL
CCCCCCCCCCEEEEECHHHHCCCCHHCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
IDADEGEICTLGQAPSTLSASTKARIGYVPQQHYGYEGFSVERALSLHASFYPDWDPKLE
HCCCCCCEEECCCCCCCCCCCCCCEECCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCHHH
QSWMKRFGLDPKAQVNRLSVGQRQSLAIIMAMAYRPSLLVLDEPVASLDPSARRRFMGDL
HHHHHHHCCCCHHHHHHCCCCCCHHHHEEEEHHCCCCEEEEECCHHHCCHHHHHHHHHHH
FELALESGSAVIFSSHITSDLERVASHVALLKDGQLLIMGELDAVRESVRLLTLAEGSQL
HHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHEEEEECCCCC
PDAYRVLGRQGNRVLVDGFRGESFPGLLGVDTVNLEQLFMELHP
CHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]