| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776690
Identifier: 119776690
GI number: 119776690
Start: 4192005
End: 4193357
Strand: Direct
Name: 119776690
Synonym: Sama_3558
Alternate gene names: NA
Gene position: 4192005-4193357 (Clockwise)
Preceding gene: 119776686
Following gene: 119776692
Centisome position: 97.35
GC content: 57.43
Gene sequence:
>1353_bases ATGCAGATTAAGACTCGCGTTTCTCTTGCCGTTGCCATTGCGCTGGCCAGCGCCGGCTCCCTGGCTGCCGACAATCACAA AGCAATGCAAGGGCTCAAAAATGGTCGCGCCCACGTTGCCGATGAGCTGATTGTCCAATACCGCGCCGACTCCAACGACA GCCAAAAAGAACGCGTCCTGTCCCGAGTTCAGGCTAACCACATCGAAACCCTCGGCAAAAATCAGCGTGGTGAACTTCAC CTCGTCAGCCTGCCCGTTGGCAAGGACATGGCAGCAGCCATGCGCGAACTTGCCGCGGATCCCAACGTGGAATTTGTTGA ACCCAACTGGATTTACCAACATGCCGATGCGGCCAATGACACCTACTACACCAATGGCTCGCTCTGGGGCATGTACGGTG ACGCCACCAACCCCGCCAATGGCTGGGGCTCACATGCGGGTGAGCAATGGAATACCGGTAACACAGATTGCAGCGATGTG GTCGTTGGGATCATCGACGAAGGCTACATGTACGAACACGAAGATCTGGCAGACAACGCGTTTCAAAACCCCGGCGAAAT CCCTGGGGACGGCATAGACAACGATGGCAATGGCTATGTTGATGACGTTTATGGCTGGGACTTTGACAGCAACGACAACT CTGTCTTCGACGGCACCATAGACGATCACGGCACCCACGTAGCCGGCACCATAGGCGCTGTCGGTGGTAATGGCAAAGGC GTGGCGGGGGTTTGCTGGAACGTGAAGCTGATGAGCGGCAAGTTCCTCGGTCGCCGCGGCGGCACCACGGCCAACGCCGT TAAGGCGGTGGACTACTTCACCGATATGAAACAGCGTCATGGGCTTAATCTGGTTGCCACCAGCAACAGCTGGGGCGGCG GTGGATATTCTCAGGCGTTGGAAGATGCCATTGGCCGTGCCAATGATGCAGGTATCCTCTTCATCGCCGCTGCCGGTAAC GACAGCTACAACTGCGACTCGGGCTCCAACTGCTATCCGGCTGAATACCCAAATGACAACATCATTGCTGTGGCCTCCAT CACCAGCAGCGGTGCCATGAGCTCCTTCTCCAGCTATGGTGCTACCACTGTGGATATCTGTGCCCCGGGCTCAGGCATTT ACTCAACCGTGCCCAAGAGCAGCAAGGGCCAGGTGATTTCGGGCTACGCCAGCTACAACGGTACCTCCATGGCCACGCCT CACGTATCAGGCGCTGCCGCTCTCTACAAAGCCCTGCACCCCGGTGCCAGCCACATGGACGTGAAGGACGCATTGCTAGG CAGTGCGACTCCCACCGGTTCCTGCCAGGGTAAAGTCTCGAGCAATGGTCGCCTCGATGTCAGCAGCTTTTAA
Upstream 100 bases:
>100_bases TGCTTGTATGTTCAGATCTCCGGTCAAAAAAGCCGGGCACGTAAATCACGTGAATAAGAAGTATAAAACCCTGATAACAA TACTCTTTAGGAGATTAAGC
Downstream 100 bases:
>100_bases TCGCTGACGGCGCCATTACTCGCCTTAAAAAAGCCCCGCTCTGGCGGGGCTTTTTGTTGGGTACTCTTAAGGAGTGTAGT AAGTGGCGGCGCCCGGCCCC
Product: peptidase S8/S53 subtilisin kexin sedolisin
Products: NA
Alternate protein names: Ak.1 protease [H]
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MQIKTRVSLAVAIALASAGSLAADNHKAMQGLKNGRAHVADELIVQYRADSNDSQKERVLSRVQANHIETLGKNQRGELH LVSLPVGKDMAAAMRELAADPNVEFVEPNWIYQHADAANDTYYTNGSLWGMYGDATNPANGWGSHAGEQWNTGNTDCSDV VVGIIDEGYMYEHEDLADNAFQNPGEIPGDGIDNDGNGYVDDVYGWDFDSNDNSVFDGTIDDHGTHVAGTIGAVGGNGKG VAGVCWNVKLMSGKFLGRRGGTTANAVKAVDYFTDMKQRHGLNLVATSNSWGGGGYSQALEDAIGRANDAGILFIAAAGN DSYNCDSGSNCYPAEYPNDNIIAVASITSSGAMSSFSSYGATTVDICAPGSGIYSTVPKSSKGQVISGYASYNGTSMATP HVSGAAALYKALHPGASHMDVKDALLGSATPTGSCQGKVSSNGRLDVSSF
Sequences:
>Translated_450_residues MQIKTRVSLAVAIALASAGSLAADNHKAMQGLKNGRAHVADELIVQYRADSNDSQKERVLSRVQANHIETLGKNQRGELH LVSLPVGKDMAAAMRELAADPNVEFVEPNWIYQHADAANDTYYTNGSLWGMYGDATNPANGWGSHAGEQWNTGNTDCSDV VVGIIDEGYMYEHEDLADNAFQNPGEIPGDGIDNDGNGYVDDVYGWDFDSNDNSVFDGTIDDHGTHVAGTIGAVGGNGKG VAGVCWNVKLMSGKFLGRRGGTTANAVKAVDYFTDMKQRHGLNLVATSNSWGGGGYSQALEDAIGRANDAGILFIAAAGN DSYNCDSGSNCYPAEYPNDNIIAVASITSSGAMSSFSSYGATTVDICAPGSGIYSTVPKSSKGQVISGYASYNGTSMATP HVSGAAALYKALHPGASHMDVKDALLGSATPTGSCQGKVSSNGRLDVSSF >Mature_450_residues MQIKTRVSLAVAIALASAGSLAADNHKAMQGLKNGRAHVADELIVQYRADSNDSQKERVLSRVQANHIETLGKNQRGELH LVSLPVGKDMAAAMRELAADPNVEFVEPNWIYQHADAANDTYYTNGSLWGMYGDATNPANGWGSHAGEQWNTGNTDCSDV VVGIIDEGYMYEHEDLADNAFQNPGEIPGDGIDNDGNGYVDDVYGWDFDSNDNSVFDGTIDDHGTHVAGTIGAVGGNGKG VAGVCWNVKLMSGKFLGRRGGTTANAVKAVDYFTDMKQRHGLNLVATSNSWGGGGYSQALEDAIGRANDAGILFIAAAGN DSYNCDSGSNCYPAEYPNDNIIAVASITSSGAMSSFSSYGATTVDICAPGSGIYSTVPKSSKGQVISGYASYNGTSMATP HVSGAAALYKALHPGASHMDVKDALLGSATPTGSCQGKVSSNGRLDVSSF
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320775, Length=326, Percent_Identity=29.1411042944785, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6324576, Length=337, Percent_Identity=26.4094955489614, Blast_Score=80, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 - InterPro: IPR009020 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 47026; Mature: 47026
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIKTRVSLAVAIALASAGSLAADNHKAMQGLKNGRAHVADELIVQYRADSNDSQKERVL CCCCHHHHHEEEEHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHEEEECCCCCHHHHHHH SRVQANHIETLGKNQRGELHLVSLPVGKDMAAAMRELAADPNVEFVEPNWIYQHADAAND HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEECCCEEEECCCCCCC TYYTNGSLWGMYGDATNPANGWGSHAGEQWNTGNTDCSDVVVGIIDEGYMYEHEDLADNA EEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCEECCHHHHHHH FQNPGEIPGDGIDNDGNGYVDDVYGWDFDSNDNSVFDGTIDDHGTHVAGTIGAVGGNGKG CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCE VAGVCWNVKLMSGKFLGRRGGTTANAVKAVDYFTDMKQRHGLNLVATSNSWGGGGYSQAL EEEEEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH EDAIGRANDAGILFIAAAGNDSYNCDSGSNCYPAEYPNDNIIAVASITSSGAMSSFSSYG HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCC ATTVDICAPGSGIYSTVPKSSKGQVISGYASYNGTSMATPHVSGAAALYKALHPGASHMD CCEEEEECCCCCCHHCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHHHHHHCCCCCCCC VKDALLGSATPTGSCQGKVSSNGRLDVSSF HHHHHHCCCCCCCCCCEEECCCCCEEECCC >Mature Secondary Structure MQIKTRVSLAVAIALASAGSLAADNHKAMQGLKNGRAHVADELIVQYRADSNDSQKERVL CCCCHHHHHEEEEHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHEEEECCCCCHHHHHHH SRVQANHIETLGKNQRGELHLVSLPVGKDMAAAMRELAADPNVEFVEPNWIYQHADAAND HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEECCCEEEECCCCCCC TYYTNGSLWGMYGDATNPANGWGSHAGEQWNTGNTDCSDVVVGIIDEGYMYEHEDLADNA EEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEECCCCEECCHHHHHHH FQNPGEIPGDGIDNDGNGYVDDVYGWDFDSNDNSVFDGTIDDHGTHVAGTIGAVGGNGKG CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCE VAGVCWNVKLMSGKFLGRRGGTTANAVKAVDYFTDMKQRHGLNLVATSNSWGGGGYSQAL EEEEEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH EDAIGRANDAGILFIAAAGNDSYNCDSGSNCYPAEYPNDNIIAVASITSSGAMSSFSSYG HHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCC ATTVDICAPGSGIYSTVPKSSKGQVISGYASYNGTSMATPHVSGAAALYKALHPGASHMD CCEEEEECCCCCCHHCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHHHHHHCCCCCCCC VKDALLGSATPTGSCQGKVSSNGRLDVSSF HHHHHHCCCCCCCCCCEEECCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7993087; 10588904 [H]