Click here to switch to the map view.

The map label for this gene is yxkH [H]

Identifier: 119776632

GI number: 119776632

Start: 4131834

End: 4132883

Strand: Reverse

Name: yxkH [H]

Synonym: Sama_3500

Alternate gene names: 119776632

Gene position: 4132883-4131834 (Counterclockwise)

Preceding gene: 119776634

Following gene: 119776619

Centisome position: 95.98

GC content: 54.1

Gene sequence:

>1050_bases
ATGCATAAAGTGTTGCTGTTTGTATGTGCTTGGTTCTCGGGCCTGGCTCAGGCGGCTGTGGTGCTGCAGTATCACCATGT
GTCTGAGACCTCGCCCCGGGTCACCAGCGTCACGCCTGCCGAGTTTCGCAGCCATATGGACTTTTTGGCAAAAAATGGCT
TTAAGGTGGTGCCTCTGACTGATCTGGTTGCTCAAATCAAGCGGGGTGAAAAACCGCCCCTGAGAGCGGTCGCCATCAGT
TTTGATGATGGTTATCAAAACATTGCTGACAATGCCGTTCCTATCTTAAAGGAATATGGATTTCCCTACACATTGTTTGT
CTCTATCGCGCCCATGGTGGAGGGGCATAAGGGGATGATGAGTGAAGCGACTCTGAAACAGTTGGCTTCTGAAGGCGCCG
AAATAGCCAATCACAGCTACGATCACGGCCATCTGGTACGGCGCTTGGAAGGGGAGGATGAATCCGCCTGGCTATTGCGG
ATAAAGACTCAACTTTTGCAAACCGAAGCCGCACTGATCCGTATTCGTGGTGAAACGACACAACCTATGTTGGCCTATCC
CTTCGGCGAATATAACGCTGCGCTGCAGTCTTTGGCCTCGGAGCTTGGGATGGTGGCATTCGGCCAACAATCCGGTGCGC
TTGGGCGGTACAGCGCCTTAACCGCCTTGCCGAGGTTTCCTGTGGGTGGGCGTTACGCGAGCCTGGAGACCCTGAAAGAA
AAACTGTACAGCTTGCCCATGCCGGTGGCGACCATATCGCCCGCAGATCCCCTGTTATTGCAGGACTGGCAACCGCGCAT
GAAAGTCACTCTCGCAGAGGTGGCCGATATCAATAAAGCCGGGATGCGATGCTTTTTGCCCAATCAGGAGGCGGTATCAC
CACGTTGGCTGGATGATGTCAGTTTTGAGGTGCAGGCGGACAAACCTCTGCCGCCGGGGCGTTCGCGCTATAACTGCACC
GCACCATCCAAAACACAAAAGGGATTTTACTGGTTTTCCCAGGCCTGGCTCAGGCCCAACAAAGATGGCAGCTGGCCAAA
AGAGCCCTAA

Upstream 100 bases:

>100_bases
ATTGGACAGCATCATGGGTAGCGCCAGGGCCCACAGACGTTGATGGGCTGACCAGGTCAATGGCAAATAATTCACAAGTT
TAATCAGAGAGTTCCTCTTA

Downstream 100 bases:

>100_bases
TCTGATTTGAGTAAACTGAGCAGCTTGGGTGCAATCTTGTCCAGATGGAGCTGCTCACAGGCGGCACCCAGCTCAACGGA
GCTGCCCGGCATGCCCCACA

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MHKVLLFVCAWFSGLAQAAVVLQYHHVSETSPRVTSVTPAEFRSHMDFLAKNGFKVVPLTDLVAQIKRGEKPPLRAVAIS
FDDGYQNIADNAVPILKEYGFPYTLFVSIAPMVEGHKGMMSEATLKQLASEGAEIANHSYDHGHLVRRLEGEDESAWLLR
IKTQLLQTEAALIRIRGETTQPMLAYPFGEYNAALQSLASELGMVAFGQQSGALGRYSALTALPRFPVGGRYASLETLKE
KLYSLPMPVATISPADPLLLQDWQPRMKVTLAEVADINKAGMRCFLPNQEAVSPRWLDDVSFEVQADKPLPPGRSRYNCT
APSKTQKGFYWFSQAWLRPNKDGSWPKEP

Sequences:

>Translated_349_residues
MHKVLLFVCAWFSGLAQAAVVLQYHHVSETSPRVTSVTPAEFRSHMDFLAKNGFKVVPLTDLVAQIKRGEKPPLRAVAIS
FDDGYQNIADNAVPILKEYGFPYTLFVSIAPMVEGHKGMMSEATLKQLASEGAEIANHSYDHGHLVRRLEGEDESAWLLR
IKTQLLQTEAALIRIRGETTQPMLAYPFGEYNAALQSLASELGMVAFGQQSGALGRYSALTALPRFPVGGRYASLETLKE
KLYSLPMPVATISPADPLLLQDWQPRMKVTLAEVADINKAGMRCFLPNQEAVSPRWLDDVSFEVQADKPLPPGRSRYNCT
APSKTQKGFYWFSQAWLRPNKDGSWPKEP
>Mature_349_residues
MHKVLLFVCAWFSGLAQAAVVLQYHHVSETSPRVTSVTPAEFRSHMDFLAKNGFKVVPLTDLVAQIKRGEKPPLRAVAIS
FDDGYQNIADNAVPILKEYGFPYTLFVSIAPMVEGHKGMMSEATLKQLASEGAEIANHSYDHGHLVRRLEGEDESAWLLR
IKTQLLQTEAALIRIRGETTQPMLAYPFGEYNAALQSLASELGMVAFGQQSGALGRYSALTALPRFPVGGRYASLETLKE
KLYSLPMPVATISPADPLLLQDWQPRMKVTLAEVADINKAGMRCFLPNQEAVSPRWLDDVSFEVQADKPLPPGRSRYNCT
APSKTQKGFYWFSQAWLRPNKDGSWPKEP

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=196, Percent_Identity=29.0816326530612, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 38795; Mature: 38795

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKVLLFVCAWFSGLAQAAVVLQYHHVSETSPRVTSVTPAEFRSHMDFLAKNGFKVVPLT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEHH
DLVAQIKRGEKPPLRAVAISFDDGYQNIADNAVPILKEYGFPYTLFVSIAPMVEGHKGMM
HHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHH
SEATLKQLASEGAEIANHSYDHGHLVRRLEGEDESAWLLRIKTQLLQTEAALIRIRGETT
HHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEEECCCC
QPMLAYPFGEYNAALQSLASELGMVAFGQQSGALGRYSALTALPRFPVGGRYASLETLKE
CCEEECCCCHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
KLYSLPMPVATISPADPLLLQDWQPRMKVTLAEVADINKAGMRCFLPNQEAVSPRWLDDV
HHHHCCCCEEECCCCCCCCCCCCCCHHEEEHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
SFEVQADKPLPPGRSRYNCTAPSKTQKGFYWFSQAWLRPNKDGSWPKEP
CEEEEECCCCCCCCCCEECCCCCCCCCCEEEEHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MHKVLLFVCAWFSGLAQAAVVLQYHHVSETSPRVTSVTPAEFRSHMDFLAKNGFKVVPLT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEHH
DLVAQIKRGEKPPLRAVAISFDDGYQNIADNAVPILKEYGFPYTLFVSIAPMVEGHKGMM
HHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHH
SEATLKQLASEGAEIANHSYDHGHLVRRLEGEDESAWLLRIKTQLLQTEAALIRIRGETT
HHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEEECCCC
QPMLAYPFGEYNAALQSLASELGMVAFGQQSGALGRYSALTALPRFPVGGRYASLETLKE
CCEEECCCCHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
KLYSLPMPVATISPADPLLLQDWQPRMKVTLAEVADINKAGMRCFLPNQEAVSPRWLDDV
HHHHCCCCEEECCCCCCCCCCCCCCHHEEEHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
SFEVQADKPLPPGRSRYNCTAPSKTQKGFYWFSQAWLRPNKDGSWPKEP
CEEEEECCCCCCCCCCEECCCCCCCCCCEEEEHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]