Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776585

Identifier: 119776585

GI number: 119776585

Start: 4083660

End: 4084202

Strand: Direct

Name: 119776585

Synonym: Sama_3453

Alternate gene names: NA

Gene position: 4083660-4084202 (Clockwise)

Preceding gene: 119776582

Following gene: 119776586

Centisome position: 94.83

GC content: 54.7

Gene sequence:

>543_bases
ATGAAACGAATCACTGCCCTTTCTCTGTTTTTCTCCGCTATGGCACTGTCTTCTTCCGCCAACGCAGTGGATCTGGGCTC
ACTGGCCTCCGACACCCTTAAGCAAGTGAGTAGCGCCACCACCCAGGCAACCGCACCGAATACTCAGGCGCAAAGCAGCG
ACTTACTGGGAGACTTGATGGCTCTGGGGTTAAATCAAAACCAGGCCGAGGGTGGCATGGGTGCACTGCTTAAAATGGCT
CAGGGTGGCCTCAGTGGCAGTGAGTTCTCCAGCCTCACTGATGCCATTCCCGGCGCTGAGCAGATGCTTTCAGCAGTCCC
GGCCCTGAACAGCAACAGCGGTATGTCTGGCCTGCTGTCCAAGGCCGGTGGCCTTGGCAGTTCACTGCAAGGCAGCGCCA
TGGTGTACGATGCTTTTGAAAAACTTGGTATTTCCCGTGAGTTGGCTGCTCCCATGGTGGATGTTGCCAAAAACTATCTT
CAAAGCACTGCCGGTGATGATACTGTTGGCTTACTGATGAAAGGCTTGGGAAGCCTGCTGTAA

Upstream 100 bases:

>100_bases
TTATCCACCATGATATGACGCAAATTCCGTGCATTTTTTACCGCGCTTTGTCTAGAATAGCCCCCTGACTTTGGATGAAT
CACCTACAGGACGTCCCTGA

Downstream 100 bases:

>100_bases
CTCATAATCTGCCCAGGAGGTCATGATGATTAGTGCACTGAAAAAGTTGCTGAACCAGCGTCTGGGTGACACTGGCCCCC
GTTTGACGCAATCAGAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKRITALSLFFSAMALSSSANAVDLGSLASDTLKQVSSATTQATAPNTQAQSSDLLGDLMALGLNQNQAEGGMGALLKMA
QGGLSGSEFSSLTDAIPGAEQMLSAVPALNSNSGMSGLLSKAGGLGSSLQGSAMVYDAFEKLGISRELAAPMVDVAKNYL
QSTAGDDTVGLLMKGLGSLL

Sequences:

>Translated_180_residues
MKRITALSLFFSAMALSSSANAVDLGSLASDTLKQVSSATTQATAPNTQAQSSDLLGDLMALGLNQNQAEGGMGALLKMA
QGGLSGSEFSSLTDAIPGAEQMLSAVPALNSNSGMSGLLSKAGGLGSSLQGSAMVYDAFEKLGISRELAAPMVDVAKNYL
QSTAGDDTVGLLMKGLGSLL
>Mature_180_residues
MKRITALSLFFSAMALSSSANAVDLGSLASDTLKQVSSATTQATAPNTQAQSSDLLGDLMALGLNQNQAEGGMGALLKMA
QGGLSGSEFSSLTDAIPGAEQMLSAVPALNSNSGMSGLLSKAGGLGSSLQGSAMVYDAFEKLGISRELAAPMVDVAKNYL
QSTAGDDTVGLLMKGLGSLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18069; Mature: 18069

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRITALSLFFSAMALSSSANAVDLGSLASDTLKQVSSATTQATAPNTQAQSSDLLGDLM
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALGLNQNQAEGGMGALLKMAQGGLSGSEFSSLTDAIPGAEQMLSAVPALNSNSGMSGLLS
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHH
KAGGLGSSLQGSAMVYDAFEKLGISRELAAPMVDVAKNYLQSTAGDDTVGLLMKGLGSLL
HHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRITALSLFFSAMALSSSANAVDLGSLASDTLKQVSSATTQATAPNTQAQSSDLLGDLM
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALGLNQNQAEGGMGALLKMAQGGLSGSEFSSLTDAIPGAEQMLSAVPALNSNSGMSGLLS
HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHH
KAGGLGSSLQGSAMVYDAFEKLGISRELAAPMVDVAKNYLQSTAGDDTVGLLMKGLGSLL
HHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA