Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776578

Identifier: 119776578

GI number: 119776578

Start: 4077409

End: 4077759

Strand: Reverse

Name: 119776578

Synonym: Sama_3446

Alternate gene names: NA

Gene position: 4077759-4077409 (Counterclockwise)

Preceding gene: 119776579

Following gene: 119776577

Centisome position: 94.7

GC content: 58.97

Gene sequence:

>351_bases
ATGTATATGACTGTATCAAAACTGCTGCTTACGCTCTGGGTAGCTGTTGCCGTGACAGCGCCACTGCACGCCGCCGACGA
TAGCAAACCCCGGTTGGTGATGAAGGCCGATAAGGCCCGGGAACAGGCGCAGAAAACCGAGGCGGAGCAGCTGGAAAAGG
CCCGCGCCGCCGCGGCCGAGACCTCAAGCCGTGAGGCCGATGTGCTGAAACGTCAGCAGCTGGGCGAGTGGGAGGATGCG
CAGCGAGATAAGGCCGCAGCCCAGTTCGATGAACGTGAAACTCGCGAGCAAAAATACCTGCGGGAAGCACAAGAAGCGGC
CAAAAAAGAGCGCAAGATACCCAAACCATGA

Upstream 100 bases:

>100_bases
GATGAGTGCTCAGGGCGTCACTACCCGATGAAAGCCTCTTTTTAGTTGCGATCCCTGCCCGCTGGCCGGACAATAAGCTG
CGGGAAACTCCAAGGGAAGG

Downstream 100 bases:

>100_bases
GTTTTTCCTGTTCCCTGTGTGGTGGCAACGACTTATATCTATTTGCCGAAGACCGACGTCGCCCCTATTACCGCTGCCGC
TGCTGCGCCCTGGTGCAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAETSSREADVLKRQQLGEWEDA
QRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP

Sequences:

>Translated_116_residues
MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAETSSREADVLKRQQLGEWEDA
QRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP
>Mature_116_residues
MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAETSSREADVLKRQQLGEWEDA
QRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13193; Mature: 13193

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSSREADVLKRQQLGEWEDAQRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSSREADVLKRQQLGEWEDAQRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA