| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776578
Identifier: 119776578
GI number: 119776578
Start: 4077409
End: 4077759
Strand: Reverse
Name: 119776578
Synonym: Sama_3446
Alternate gene names: NA
Gene position: 4077759-4077409 (Counterclockwise)
Preceding gene: 119776579
Following gene: 119776577
Centisome position: 94.7
GC content: 58.97
Gene sequence:
>351_bases ATGTATATGACTGTATCAAAACTGCTGCTTACGCTCTGGGTAGCTGTTGCCGTGACAGCGCCACTGCACGCCGCCGACGA TAGCAAACCCCGGTTGGTGATGAAGGCCGATAAGGCCCGGGAACAGGCGCAGAAAACCGAGGCGGAGCAGCTGGAAAAGG CCCGCGCCGCCGCGGCCGAGACCTCAAGCCGTGAGGCCGATGTGCTGAAACGTCAGCAGCTGGGCGAGTGGGAGGATGCG CAGCGAGATAAGGCCGCAGCCCAGTTCGATGAACGTGAAACTCGCGAGCAAAAATACCTGCGGGAAGCACAAGAAGCGGC CAAAAAAGAGCGCAAGATACCCAAACCATGA
Upstream 100 bases:
>100_bases GATGAGTGCTCAGGGCGTCACTACCCGATGAAAGCCTCTTTTTAGTTGCGATCCCTGCCCGCTGGCCGGACAATAAGCTG CGGGAAACTCCAAGGGAAGG
Downstream 100 bases:
>100_bases GTTTTTCCTGTTCCCTGTGTGGTGGCAACGACTTATATCTATTTGCCGAAGACCGACGTCGCCCCTATTACCGCTGCCGC TGCTGCGCCCTGGTGCAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 116
Protein sequence:
>116_residues MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAETSSREADVLKRQQLGEWEDA QRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP
Sequences:
>Translated_116_residues MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAETSSREADVLKRQQLGEWEDA QRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP >Mature_116_residues MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAETSSREADVLKRQQLGEWEDA QRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13193; Mature: 13193
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAE CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSSREADVLKRQQLGEWEDAQRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MYMTVSKLLLTLWVAVAVTAPLHAADDSKPRLVMKADKAREQAQKTEAEQLEKARAAAAE CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSSREADVLKRQQLGEWEDAQRDKAAAQFDERETREQKYLREAQEAAKKERKIPKP CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA