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The map label for this gene is degS [C]

Identifier: 119776532

GI number: 119776532

Start: 4026959

End: 4028179

Strand: Reverse

Name: degS [C]

Synonym: Sama_3400

Alternate gene names: 119776532

Gene position: 4028179-4026959 (Counterclockwise)

Preceding gene: 119776533

Following gene: 119776531

Centisome position: 93.54

GC content: 55.28

Gene sequence:

>1221_bases
ATGCGCTTTCTTTGTCTGGCACTGGCGGTTGCGCTTTGTGCCAACCTTTCTGGGTGTGCCAACACCCGACTTAATGCCAA
TAAATTGCCAAAAGGTGTGGCGGTCAACAAGTCCATCACCCTGCCGGTAGATGTCTCTGTGGCTTACTACGTGCCCAAAA
TTCAAATGGACAGTCGTTTCTATCTGGAGAAGTGGAATATCTGGGTAGAGCCGGGCTCCGCCTTGTCGGACGGTGTGCGT
GATGCCTTCAATGCTTACTTCAGCAATGCCGTCCTGCTGGACCGTGCAAGCGATGACGCCGTTGGCCTGGTGATAGATCT
GGATCCCGAATGGGAGTTCGTCTCTGGCAAAGCCGTGATGACCTTGAGCTACAAGGTGCTGAATGGTGGTGATAAACCGT
TGAAAGAAGGTAAGAAAACCTTTAAGGCCGACATTGGCTATGTGGGCGACAACTCTGGCATGTACAACGCGGCGATGCGG
GCAACCCAACTGGTCATTGTAGACGTGCTCAATAGCCTCAAACCCACAGCGGCCGGGTATCCGGCGCAGCTGGCCATGAA
GGCGACCAACCCGCTACAATTGGCCAACATGGAGAAGCCAGTGAGCAGTGGTACCGGGTTTTATATCAATGAAACCGGAC
AGTTACTGACGGCTGCCCATGTGCTGCGGGAATGCATGGTCACCAAGGTGCAGACACCAACTCAGTCTTACGATGCCACT
GTGGATGCCAGCTCCACCCTTTTGGATCTGGCTGTGGTGAGTACAGGTGCGCCAGCTGAGCGCTACTTGCCGCTGCGTAA
GGGCAGTGAAATCTTCCTCGGTGAAGCCGTGACCAACGTGGGTTACCCCCTGCAGGGCCTGCTTGCGGCGTCGCCAAACC
TGACCCGAGGTAACGTCAGCTCCATGAATGCCCTCAAAGGTTCCGTTGGCCAGTTCCAGTTCTCGGCACCTATTCAGCCC
GGCTCCAGCGGGGGGCCCGTGGTATCAGATGGTGGTGAACTGCTGGGAGTGACAGTTGCCACGCTCAACGCAGCCAAGCT
GATTGAATCCGGCGCCCTGCCACAGAATGTGAACTTTGCCCTCGATGCCAGGCACGTTGCCCGATTCCTCGACAAGCATC
AGGTGGCGTTTCATCAGGTAGAGCCGAATCTGAAAGGGGATATTCGTATCAGCAACGATGCGGCTTTGTCGTCTGTAGTG
CAGTTGGCCTGTTATCAATAA

Upstream 100 bases:

>100_bases
GCGCCGGTGATTCCCTAGAATCGTCCGGTTAAAAAAATGTTAAATATTTGGTTGCTCGTACGGTATGGAGTGGCCGAAAC
TGCATCGTAAGGACATCAGT

Downstream 100 bases:

>100_bases
GGAGTCAGTGACATGAAAGGAATGATATTTGGTGCCCTGGCACTGACCGGACTGATGACGTCTGCGATGGCTCAGGAGCA
GACCCAGACCCAGACCCAGA

Product: trypsin-like serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MRFLCLALAVALCANLSGCANTRLNANKLPKGVAVNKSITLPVDVSVAYYVPKIQMDSRFYLEKWNIWVEPGSALSDGVR
DAFNAYFSNAVLLDRASDDAVGLVIDLDPEWEFVSGKAVMTLSYKVLNGGDKPLKEGKKTFKADIGYVGDNSGMYNAAMR
ATQLVIVDVLNSLKPTAAGYPAQLAMKATNPLQLANMEKPVSSGTGFYINETGQLLTAAHVLRECMVTKVQTPTQSYDAT
VDASSTLLDLAVVSTGAPAERYLPLRKGSEIFLGEAVTNVGYPLQGLLAASPNLTRGNVSSMNALKGSVGQFQFSAPIQP
GSSGGPVVSDGGELLGVTVATLNAAKLIESGALPQNVNFALDARHVARFLDKHQVAFHQVEPNLKGDIRISNDAALSSVV
QLACYQ

Sequences:

>Translated_406_residues
MRFLCLALAVALCANLSGCANTRLNANKLPKGVAVNKSITLPVDVSVAYYVPKIQMDSRFYLEKWNIWVEPGSALSDGVR
DAFNAYFSNAVLLDRASDDAVGLVIDLDPEWEFVSGKAVMTLSYKVLNGGDKPLKEGKKTFKADIGYVGDNSGMYNAAMR
ATQLVIVDVLNSLKPTAAGYPAQLAMKATNPLQLANMEKPVSSGTGFYINETGQLLTAAHVLRECMVTKVQTPTQSYDAT
VDASSTLLDLAVVSTGAPAERYLPLRKGSEIFLGEAVTNVGYPLQGLLAASPNLTRGNVSSMNALKGSVGQFQFSAPIQP
GSSGGPVVSDGGELLGVTVATLNAAKLIESGALPQNVNFALDARHVARFLDKHQVAFHQVEPNLKGDIRISNDAALSSVV
QLACYQ
>Mature_406_residues
MRFLCLALAVALCANLSGCANTRLNANKLPKGVAVNKSITLPVDVSVAYYVPKIQMDSRFYLEKWNIWVEPGSALSDGVR
DAFNAYFSNAVLLDRASDDAVGLVIDLDPEWEFVSGKAVMTLSYKVLNGGDKPLKEGKKTFKADIGYVGDNSGMYNAAMR
ATQLVIVDVLNSLKPTAAGYPAQLAMKATNPLQLANMEKPVSSGTGFYINETGQLLTAAHVLRECMVTKVQTPTQSYDAT
VDASSTLLDLAVVSTGAPAERYLPLRKGSEIFLGEAVTNVGYPLQGLLAASPNLTRGNVSSMNALKGSVGQFQFSAPIQP
GSSGGPVVSDGGELLGVTVATLNAAKLIESGALPQNVNFALDARHVARFLDKHQVAFHQVEPNLKGDIRISNDAALSSVV
QLACYQ

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 43135; Mature: 43135

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLCLALAVALCANLSGCANTRLNANKLPKGVAVNKSITLPVDVSVAYYVPKIQMDSRF
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEEEEEEEEEECCEE
YLEKWNIWVEPGSALSDGVRDAFNAYFSNAVLLDRASDDAVGLVIDLDPEWEFVSGKAVM
EEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCEEECCCEEE
TLSYKVLNGGDKPLKEGKKTFKADIGYVGDNSGMYNAAMRATQLVIVDVLNSLKPTAAGY
EEEEEEECCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PAQLAMKATNPLQLANMEKPVSSGTGFYINETGQLLTAAHVLRECMVTKVQTPTQSYDAT
CCEEEEECCCCEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
VDASSTLLDLAVVSTGAPAERYLPLRKGSEIFLGEAVTNVGYPLQGLLAASPNLTRGNVS
ECCCHHHEEEEEECCCCCHHHCCCCCCCCEEEEEHHHHHCCCCHHHHEECCCCCCCCCCC
SMNALKGSVGQFQFSAPIQPGSSGGPVVSDGGELLGVTVATLNAAKLIESGALPQNVNFA
HHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCEE
LDARHVARFLDKHQVAFHQVEPNLKGDIRISNDAALSSVVQLACYQ
ECHHHHHHHHHHHHHEEEEECCCCCCCEEECCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFLCLALAVALCANLSGCANTRLNANKLPKGVAVNKSITLPVDVSVAYYVPKIQMDSRF
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEEEEEEEEEEECCEE
YLEKWNIWVEPGSALSDGVRDAFNAYFSNAVLLDRASDDAVGLVIDLDPEWEFVSGKAVM
EEEEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCEEECCCEEE
TLSYKVLNGGDKPLKEGKKTFKADIGYVGDNSGMYNAAMRATQLVIVDVLNSLKPTAAGY
EEEEEEECCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PAQLAMKATNPLQLANMEKPVSSGTGFYINETGQLLTAAHVLRECMVTKVQTPTQSYDAT
CCEEEEECCCCEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
VDASSTLLDLAVVSTGAPAERYLPLRKGSEIFLGEAVTNVGYPLQGLLAASPNLTRGNVS
ECCCHHHEEEEEECCCCCHHHCCCCCCCCEEEEEHHHHHCCCCHHHHEECCCCCCCCCCC
SMNALKGSVGQFQFSAPIQPGSSGGPVVSDGGELLGVTVATLNAAKLIESGALPQNVNFA
HHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCEE
LDARHVARFLDKHQVAFHQVEPNLKGDIRISNDAALSSVVQLACYQ
ECHHHHHHHHHHHHHEEEEECCCCCCCEEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]