Click here to switch to the map view.

The map label for this gene is 119776504

Identifier: 119776504

GI number: 119776504

Start: 3998199

End: 3998792

Strand: Reverse

Name: 119776504

Synonym: Sama_3372

Alternate gene names: NA

Gene position: 3998792-3998199 (Counterclockwise)

Preceding gene: 119776505

Following gene: 119776503

Centisome position: 92.86

GC content: 46.3

Gene sequence:

>594_bases
ATGGCGAACATAAATCTGTTGCCCTGGCGTGAAGAGGCCAGAGAAAAACAAAAACGTGATTATATTGGCGCACTGGCACT
GGTATTCCTGTTGTCGGCTTTCTTGGTATTTGCTTGTTTACAGGTCATCGACATGATGACTGATGAGCAGAAAGCGAGAA
ACGCGTTTCTGACTACTGAAATTCAGCTGCTCGAAAAGCAAATCGCCGAGATTAAAAAGATTACTGAACGCAAAAAAGAT
ATCGAGCGTCGCACAGATATTATTTTGAATCTGCAGCAGGCAAGAAATCTTCCCACTCACGTACTCGATGAGCTGGTGCG
TGTTGTGCCGCCCGGCATCTATCTTTCAAGTATTGAAAAGAAAGGCGCCATGGTATGGATTGAGGGACGTAGCGAATCCA
ATAACAACGTTGCCAACATGATGCGTAAAATGAAGACCTCTGCTTGGCTCGATGACCCAGTGATGCAAAGCATTGTGTCT
CAGAACGACGAGCTTAGAAAACTGCAGCGCTTCAGTCTTAAGGTAACCGTCGTTGATAAAGCCGCCCAAGAGCTGGAAAA
AGCGGCCGCCAGTAAACAAGGAGCGGCAAAATGA

Upstream 100 bases:

>100_bases
AGGGAAATTTGCATGCCGACGATTCTGTTAAATCCACCTTGCAACCCAGTATCAGTAAATACATGGTTGCCTGTGGCCTG
GCATTAAGGAGCTACGGTCA

Downstream 100 bases:

>100_bases
AGCTGGATCTGAGCGAATTCAACGACATTGACTTTGAGAATATTGGTGGCTGGCCAGCCCAGGTAAAGGTCGTATTTGCC
ATTCTCCTGGCTGTGATTGT

Product: type IV pilus biogenesis protein PilN

Products: NA

Alternate protein names: Fimbrial Assembly; Type IV Pilus Biogenesis Protein PilN; Type 4 Fimbrial Biogenesis Protein PilN; Type IV Pilus Assembly Protein PilN; Tfp Pilus Assembly Protein PilN; Fimbrial Assembly Protein; Fimbrial Assembly Protein PilN; Periplasmic Sensor Signal Transduction Histidine Kinase; Tfp Pilus Assembly Protein; PilN Type IV Pilus Assembly Protein; Type IV Pilus Protein PilN; Type IV Pilus Biogenesis Fimbrial Assembly; Fimbrial Assembly Membrane Protein; LOW QUALITY PROTEIN Tfp Pilus Assembly Protein PilN; Pili Assembly Protein PilN; Type IV Fimbrial Biogenesis Protein PilN; Fimbriae Biogenesis-Like Protein; Type 4 Fimbrial Biogenesis Protein; Type IV Pilus Biogenesis PilN; Fimbrial Type-4 Assembly Transmembrane Protein; Type IV Pilus Assembly Protein Piln

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MANINLLPWREEAREKQKRDYIGALALVFLLSAFLVFACLQVIDMMTDEQKARNAFLTTEIQLLEKQIAEIKKITERKKD
IERRTDIILNLQQARNLPTHVLDELVRVVPPGIYLSSIEKKGAMVWIEGRSESNNNVANMMRKMKTSAWLDDPVMQSIVS
QNDELRKLQRFSLKVTVVDKAAQELEKAAASKQGAAK

Sequences:

>Translated_197_residues
MANINLLPWREEAREKQKRDYIGALALVFLLSAFLVFACLQVIDMMTDEQKARNAFLTTEIQLLEKQIAEIKKITERKKD
IERRTDIILNLQQARNLPTHVLDELVRVVPPGIYLSSIEKKGAMVWIEGRSESNNNVANMMRKMKTSAWLDDPVMQSIVS
QNDELRKLQRFSLKVTVVDKAAQELEKAAASKQGAAK
>Mature_196_residues
ANINLLPWREEAREKQKRDYIGALALVFLLSAFLVFACLQVIDMMTDEQKARNAFLTTEIQLLEKQIAEIKKITERKKDI
ERRTDIILNLQQARNLPTHVLDELVRVVPPGIYLSSIEKKGAMVWIEGRSESNNNVANMMRKMKTSAWLDDPVMQSIVSQ
NDELRKLQRFSLKVTVVDKAAQELEKAAASKQGAAK

Specific function: Unknown

COG id: COG3166

COG function: function code NU; Tfp pilus assembly protein PilN

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22496; Mature: 22364

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANINLLPWREEAREKQKRDYIGALALVFLLSAFLVFACLQVIDMMTDEQKARNAFLTTE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQLLEKQIAEIKKITERKKDIERRTDIILNLQQARNLPTHVLDELVRVVPPGIYLSSIEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHC
KGAMVWIEGRSESNNNVANMMRKMKTSAWLDDPVMQSIVSQNDELRKLQRFSLKVTVVDK
CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AAQELEKAAASKQGAAK
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ANINLLPWREEAREKQKRDYIGALALVFLLSAFLVFACLQVIDMMTDEQKARNAFLTTE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQLLEKQIAEIKKITERKKDIERRTDIILNLQQARNLPTHVLDELVRVVPPGIYLSSIEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHC
KGAMVWIEGRSESNNNVANMMRKMKTSAWLDDPVMQSIVSQNDELRKLQRFSLKVTVVDK
CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AAQELEKAAASKQGAAK
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA