| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776464
Identifier: 119776464
GI number: 119776464
Start: 3959580
End: 3959927
Strand: Reverse
Name: 119776464
Synonym: Sama_3332
Alternate gene names: NA
Gene position: 3959927-3959580 (Counterclockwise)
Preceding gene: 119776469
Following gene: 119776463
Centisome position: 91.96
GC content: 56.32
Gene sequence:
>348_bases GTGAACGACACTCAGTACAGCGACACAGGTTTTTGGCAAAAGGTGAAGGACTTTGCCAGGCAGGCGGGCCGTGAGGTGAT AGAGAAAGCACTGTGGCTTTATTATGCCGCCCAGCGCCCCGAGACCCCCACCTGGGCCAAAACCATCATCTATGGTGCTC TGGGTTACTTTATTACCCCGTTGGACGCCATTCCGGATCTCACCCCTTTGATGGGGTTCTCCGATGATCTCGGGGCGCTG GCCGCGGCGCTGACCATGGTGGCCGTCTATATTGACGATGGCACCCGCGCCAGAGCGGCCGAAAAACTGGAGGCTTGGTT TGGCACCGATAATAAACCAACTAAATGA
Upstream 100 bases:
>100_bases AAGTGAATAATCACGTAGCGCACTGATGTTGCCTCGCTGACAGAGGCACGCTTTTGACGTACAGTGACATGAATGAAGTC GCAGCAAGGGAGGCTTGGCC
Downstream 100 bases:
>100_bases TTGTAAAGGATTTATCAGGCGTTCTTTTCGGGTCAAAAAATATTCTGTTGACCCTATTCCAGTTTTACCAAACCGGGGCT ATATTGTGCCCACGCTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 115; Mature: 115
Protein sequence:
>115_residues MNDTQYSDTGFWQKVKDFARQAGREVIEKALWLYYAAQRPETPTWAKTIIYGALGYFITPLDAIPDLTPLMGFSDDLGAL AAALTMVAVYIDDGTRARAAEKLEAWFGTDNKPTK
Sequences:
>Translated_115_residues MNDTQYSDTGFWQKVKDFARQAGREVIEKALWLYYAAQRPETPTWAKTIIYGALGYFITPLDAIPDLTPLMGFSDDLGAL AAALTMVAVYIDDGTRARAAEKLEAWFGTDNKPTK >Mature_115_residues MNDTQYSDTGFWQKVKDFARQAGREVIEKALWLYYAAQRPETPTWAKTIIYGALGYFITPLDAIPDLTPLMGFSDDLGAL AAALTMVAVYIDDGTRARAAEKLEAWFGTDNKPTK
Specific function: Unknown
COG id: COG3339
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12828; Mature: 12828
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDTQYSDTGFWQKVKDFARQAGREVIEKALWLYYAAQRPETPTWAKTIIYGALGYFITP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC LDAIPDLTPLMGFSDDLGALAAALTMVAVYIDDGTRARAAEKLEAWFGTDNKPTK HHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNDTQYSDTGFWQKVKDFARQAGREVIEKALWLYYAAQRPETPTWAKTIIYGALGYFITP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC LDAIPDLTPLMGFSDDLGALAAALTMVAVYIDDGTRARAAEKLEAWFGTDNKPTK HHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA