Click here to switch to the map view.

The map label for this gene is yigB [H]

Identifier: 119776378

GI number: 119776378

Start: 3841216

End: 3841932

Strand: Reverse

Name: yigB [H]

Synonym: Sama_3246

Alternate gene names: 119776378

Gene position: 3841932-3841216 (Counterclockwise)

Preceding gene: 119776379

Following gene: 119776377

Centisome position: 89.22

GC content: 58.58

Gene sequence:

>717_bases
ATGCAGATATTTCGTCGCCTTAAGCCCATTGCCGCCATCAGTTTTGACCTGGACGACACCCTGTACGACAACCGCCCCGT
GATTATGGCCGCGGAGCTGGCGCAGCTGATGTACCTTGCGCGCCATTATCCCGTGACCAAGGCCTGGGGGCGGGACGAAT
GGCGCCATCATAAGCTCAGGGTATTGGCGCATCATCCCGTGCTGGCACACGACCCAACGGCACTGCGATTGCTGACTCTG
CATTCAGGTCTGCTTTATTTTGGTTTGTCCGAAGCGGACGCCACAACGGCTGCCGGCGCCGTGATGGATGAATTTATCAG
GGCCCGCAGCCACTTTCGGGTACCTGAAAGCTCGTTGCAGCTGCTGGCAAAACTCGGGCAAAAATACCCACTGATAGGCC
TCACCAATGGCAATGTCGACCCGGAGCGTATAGGTCTGGGAGACCGGCTGGTGTTTGTGCTTGCCGCGGGCAGTGGTGTA
AGGATGAAACCTGTGGACGATTTGTTCCGGATGGGATGCAATCGCCTTGGCATAGCGTCTGAGCAGTTGCTCCATGTGGG
GGACAGCCACAGCGCCGATGTGGTGGGCGCACTCAAGGCCGGGTGTCAGGCCGTGCTGCTCAATCCTGCCCATGGAGGAG
TCGAACCAGGCCCACTGGCATCGCCATTGCCTCACCTGCAAATTCAGCGACTGGATGCCTTGCTGGCACTGCTGTAA

Upstream 100 bases:

>100_bases
CCAATCTTGCCACCACACAAATTTACACCAGTCTCGACTTTCAGCATCTGGCCAAGGTGTATGATGGCGCCCACCCTAGA
GCGCGCAAAAAGGGGGATTG

Downstream 100 bases:

>100_bases
ATCGCTGGGCATCCAAGCATCCCGATACGAATTCAGTCTGAATTTATCATTTCCTTAACATTGCTGACCTGATAGCCTAT
AACTTCCTCAAAGGAAAGGG

Product: HAD-superfamily hydrolase, subfamily IA, variant 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MQIFRRLKPIAAISFDLDDTLYDNRPVIMAAELAQLMYLARHYPVTKAWGRDEWRHHKLRVLAHHPVLAHDPTALRLLTL
HSGLLYFGLSEADATTAAGAVMDEFIRARSHFRVPESSLQLLAKLGQKYPLIGLTNGNVDPERIGLGDRLVFVLAAGSGV
RMKPVDDLFRMGCNRLGIASEQLLHVGDSHSADVVGALKAGCQAVLLNPAHGGVEPGPLASPLPHLQIQRLDALLALL

Sequences:

>Translated_238_residues
MQIFRRLKPIAAISFDLDDTLYDNRPVIMAAELAQLMYLARHYPVTKAWGRDEWRHHKLRVLAHHPVLAHDPTALRLLTL
HSGLLYFGLSEADATTAAGAVMDEFIRARSHFRVPESSLQLLAKLGQKYPLIGLTNGNVDPERIGLGDRLVFVLAAGSGV
RMKPVDDLFRMGCNRLGIASEQLLHVGDSHSADVVGALKAGCQAVLLNPAHGGVEPGPLASPLPHLQIQRLDALLALL
>Mature_238_residues
MQIFRRLKPIAAISFDLDDTLYDNRPVIMAAELAQLMYLARHYPVTKAWGRDEWRHHKLRVLAHHPVLAHDPTALRLLTL
HSGLLYFGLSEADATTAAGAVMDEFIRARSHFRVPESSLQLLAKLGQKYPLIGLTNGNVDPERIGLGDRLVFVLAAGSGV
RMKPVDDLFRMGCNRLGIASEQLLHVGDSHSADVVGALKAGCQAVLLNPAHGGVEPGPLASPLPHLQIQRLDALLALL

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjjG [H]

Homologues:

Organism=Escherichia coli, GI2367295, Length=238, Percent_Identity=37.3949579831933, Blast_Score=174, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 26014; Mature: 26014

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIFRRLKPIAAISFDLDDTLYDNRPVIMAAELAQLMYLARHYPVTKAWGRDEWRHHKLR
CCHHHHHCCHHEEEECCCCHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEE
VLAHHPVLAHDPTALRLLTLHSGLLYFGLSEADATTAAGAVMDEFIRARSHFRVPESSLQ
EEEECCEEECCCHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
LLAKLGQKYPLIGLTNGNVDPERIGLGDRLVFVLAAGSGVRMKPVDDLFRMGCNRLGIAS
HHHHHCCCCCEEEECCCCCCHHHHCCCCEEEEEEECCCCCEECCHHHHHHCCCCCCCCCH
EQLLHVGDSHSADVVGALKAGCQAVLLNPAHGGVEPGPLASPLPHLQIQRLDALLALL
HHHHCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
>Mature Secondary Structure
MQIFRRLKPIAAISFDLDDTLYDNRPVIMAAELAQLMYLARHYPVTKAWGRDEWRHHKLR
CCHHHHHCCHHEEEECCCCHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEE
VLAHHPVLAHDPTALRLLTLHSGLLYFGLSEADATTAAGAVMDEFIRARSHFRVPESSLQ
EEEECCEEECCCHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
LLAKLGQKYPLIGLTNGNVDPERIGLGDRLVFVLAAGSGVRMKPVDDLFRMGCNRLGIAS
HHHHHCCCCCEEEECCCCCCHHHHCCCCEEEEEEECCCCCEECCHHHHHHCCCCCCCCCH
EQLLHVGDSHSADVVGALKAGCQAVLLNPAHGGVEPGPLASPLPHLQIQRLDALLALL
HHHHCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254268; 1379743; 9278503; 6379604; 6324092 [H]