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The map label for this gene is ylcD [C]

Identifier: 119776321

GI number: 119776321

Start: 3783477

End: 3784682

Strand: Reverse

Name: ylcD [C]

Synonym: Sama_3189

Alternate gene names: 119776321

Gene position: 3784682-3783477 (Counterclockwise)

Preceding gene: 119776322

Following gene: 119776320

Centisome position: 87.89

GC content: 59.37

Gene sequence:

>1206_bases
ATGAAATCCATTTTTTTCAGTCAATCAATTATCAGCGGAGCAAACGCCATGTCTGCAATGAATACGAAAGCCTCTTTATC
TGCACTGGCGTTTCTGGTTGCTCTCGCTTTTGCGTTACCCCAGTCAAAGCCTGTCTGGGCAAGTGAGGGCCATGGTCACG
GCGCGGCCGAAAGCGCCGCTGAAACCGCAGATGCCCATGATGAAGACAAGGCGCTGAGACTCAGCCAAACCCAGCGCGAA
CTCGCCGGCATCCGGGTCGAAACCCTGTCGTCCAGTGGTTTTGATTTAAGCGCCGTAGCCACCGCCAGCCTTGTGGTGGA
CCGTGACCGCACCATTACCCTGGCGCCGCAACTTGAGGTGCGCGTGCTGGAGCGCCATGTGGTACCCGGTGAGGAAGTAA
AGCAAGGTGAGCCCTTACTGACCCTCGGCGGGGCGGCCATAGCACAGGCGCAGGCCGACTATATCAATGCCGCGACCGAG
TGGAGCCGCATCAGTCGCATGGGCGAAAGTGCCGTGAGCCAATCCAGCAGGCTGCAGGCGCGGGTGGACTACGAGCTTAA
GCGCGCCATCCTCGAGTCTATCAAAATGACACCCAAGCAAATCAAAGCCCTGGAAGCGGCGCCGGATAGCATCGGCAGCT
TCAAGTTACTGGCGCCCATCAATGGCAGGGTGCAGCAGGACGTGGCCAGTCGTGGTCAGGTATTGGCGGCAGGCTCGCCG
CTGATGCAGCTTACCGACGAATCCTATTTGTGGGTCGAAGCCGAGCTGACGCCGGCGCAGTCCCGTGGTCTTGCCATGGG
CAGCTATGCCCGGGTGAGCGTATCGGGTAGGTGGCTTAAGGCGAAGGTGATTGGCCGCTCCCACGAGCTTAACCCCATCA
CCCGTACCGAGCAGGTGCTGCTGTCGATGGCCAATCCTGGCCACGAAGTACATGCAGGGGAGTTTGCCGAACTTTTGCTG
CCTCAGAATTCCCGTCAGGGAATAGTACTGCCGGACGCGGCTCTGAGTCGCAGCGGCGATGGAGACTGGCAGGTGTTTGT
GGAAGACGCCGACGGTTTTGAGGCGCTGGAGGTGGAAATCGAGGCCCGTGCCCGTGGGTTGAATCTGGTTAAGGGGTTGG
AGCCGGGTCAGAGGGTCGTGATGTCTGGCGCCTTCTTCCTGGCCTCCGAGCTGGCCAAGTCTGGTTTTGATATCCACAAC
CACTGA

Upstream 100 bases:

>100_bases
CCACTTCGCCCGTCGGCGCGTCGCTCTTTAATGAACTCAAGCTGACCTTGACCACCGATACCGGGAAAGCCTCCGGCACC
GGGACATTGGAGGTGCGGCC

Downstream 100 bases:

>100_bases
TAAGAGGGCAAGCCATGCTACAGAAACTCATAGAGCAGGCGGTGCGAAGCCGCCTGATAGTGCTGATTTTTCTTATCGGG
GCCATGGCGGCTGCCGCCGT

Product: secretion protein HlyD

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; Cation Efflux Protein; Cobalt-Zinc-Cadmium Resistance Protein CzcB; Cation Efflux System Protein; Cation Efflux System Protein CusB; Cation Efflux System Transmembrane Protein; Cation Efflux Family Protein; RND Family Transporter Membrane-Fusion Protein; RND Efflux Membrane Fusion Protein; Metal Transporter-Like Exported Protein; Heavy Metal Resistance Protein Czcb; H+-Transporting Two-Sector ATPase Delta Subunit; Metal Transport-Related Exported Protein; Cobalt-Zinc-Cadmium Resistance Protein; Heavy Metal Efflux Pump Czcb Family; RND Efflux Membrane-Fusion Protein; Heavy Metal Resistance Protein CzcB; Membrane-Fusion Protein RND-Like Efflux System Component; HlyD Family Heavy Metal Efflux Pump; Cobalt-Zinc-Cadmium Resistance Membrane-Fusion Protein; Cation Efflux System; Co/Zn/Cd Efflux System Membrane Fusion Protein; Heavy Metal Efflux System Protein; Cation Efflux System Membrane Protein; CzcB Family Heavy Metal Efflux Protein; Membrane Fusion Protein SilB; Copper Efflux System Membrane Protein CusB; Secretion Protein Putative RND Family Efflux Protein; Copper/Silver Efflux System Protein CusB; Copper/Silver Efflux System Membrane Fusion Protein; Secretion Protein Putative RND Family Efflux Protein; Metal Ion Efflux Membrane Fusion Protein Family; Efflux Transporter Rnd Family Mfp Subunit; Heavy Metal RND Efflux Membrane Fusion Protein CzcB Family; RND Family Efflux Transporter

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKSIFFSQSIISGANAMSAMNTKASLSALAFLVALAFALPQSKPVWASEGHGHGAAESAAETADAHDEDKALRLSQTQRE
LAGIRVETLSSSGFDLSAVATASLVVDRDRTITLAPQLEVRVLERHVVPGEEVKQGEPLLTLGGAAIAQAQADYINAATE
WSRISRMGESAVSQSSRLQARVDYELKRAILESIKMTPKQIKALEAAPDSIGSFKLLAPINGRVQQDVASRGQVLAAGSP
LMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVSGRWLKAKVIGRSHELNPITRTEQVLLSMANPGHEVHAGEFAELLL
PQNSRQGIVLPDAALSRSGDGDWQVFVEDADGFEALEVEIEARARGLNLVKGLEPGQRVVMSGAFFLASELAKSGFDIHN
H

Sequences:

>Translated_401_residues
MKSIFFSQSIISGANAMSAMNTKASLSALAFLVALAFALPQSKPVWASEGHGHGAAESAAETADAHDEDKALRLSQTQRE
LAGIRVETLSSSGFDLSAVATASLVVDRDRTITLAPQLEVRVLERHVVPGEEVKQGEPLLTLGGAAIAQAQADYINAATE
WSRISRMGESAVSQSSRLQARVDYELKRAILESIKMTPKQIKALEAAPDSIGSFKLLAPINGRVQQDVASRGQVLAAGSP
LMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVSGRWLKAKVIGRSHELNPITRTEQVLLSMANPGHEVHAGEFAELLL
PQNSRQGIVLPDAALSRSGDGDWQVFVEDADGFEALEVEIEARARGLNLVKGLEPGQRVVMSGAFFLASELAKSGFDIHN
H
>Mature_401_residues
MKSIFFSQSIISGANAMSAMNTKASLSALAFLVALAFALPQSKPVWASEGHGHGAAESAAETADAHDEDKALRLSQTQRE
LAGIRVETLSSSGFDLSAVATASLVVDRDRTITLAPQLEVRVLERHVVPGEEVKQGEPLLTLGGAAIAQAQADYINAATE
WSRISRMGESAVSQSSRLQARVDYELKRAILESIKMTPKQIKALEAAPDSIGSFKLLAPINGRVQQDVASRGQVLAAGSP
LMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVSGRWLKAKVIGRSHELNPITRTEQVLLSMANPGHEVHAGEFAELLL
PQNSRQGIVLPDAALSRSGDGDWQVFVEDADGFEALEVEIEARARGLNLVKGLEPGQRVVMSGAFFLASELAKSGFDIHN
H

Specific function: Possible component of copper transport system [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42941; Mature: 42941

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIFFSQSIISGANAMSAMNTKASLSALAFLVALAFALPQSKPVWASEGHGHGAAESAA
CCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
ETADAHDEDKALRLSQTQRELAGIRVETLSSSGFDLSAVATASLVVDRDRTITLAPQLEV
HHCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHEEEEEEECCCEEEECCCHHH
RVLERHVVPGEEVKQGEPLLTLGGAAIAQAQADYINAATEWSRISRMGESAVSQSSRLQA
HHHHHHCCCCHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
RVDYELKRAILESIKMTPKQIKALEAAPDSIGSFKLLAPINGRVQQDVASRGQVLAAGSP
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCEEECCCC
LMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVSGRWLKAKVIGRSHELNPITRTEQVL
HHEECCCCEEEEEEEECCCCCCCCEECCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHH
LSMANPGHEVHAGEFAELLLPQNSRQGIVLPDAALSRSGDGDWQVFVEDADGFEALEVEI
HHHCCCCCCCCCCHHHHHHCCCCCCCCEEECCHHHCCCCCCCEEEEEECCCCCEEEEEEE
EARARGLNLVKGLEPGQRVVMSGAFFLASELAKSGFDIHNH
EHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSIFFSQSIISGANAMSAMNTKASLSALAFLVALAFALPQSKPVWASEGHGHGAAESAA
CCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
ETADAHDEDKALRLSQTQRELAGIRVETLSSSGFDLSAVATASLVVDRDRTITLAPQLEV
HHCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHEEEEEEECCCEEEECCCHHH
RVLERHVVPGEEVKQGEPLLTLGGAAIAQAQADYINAATEWSRISRMGESAVSQSSRLQA
HHHHHHCCCCHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
RVDYELKRAILESIKMTPKQIKALEAAPDSIGSFKLLAPINGRVQQDVASRGQVLAAGSP
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCEEECCCC
LMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVSGRWLKAKVIGRSHELNPITRTEQVL
HHEECCCCEEEEEEEECCCCCCCCEECCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHH
LSMANPGHEVHAGEFAELLLPQNSRQGIVLPDAALSRSGDGDWQVFVEDADGFEALEVEI
HHHCCCCCCCCCCHHHHHHCCCCCCCCEEECCHHHCCCCCCCEEEEEECCCCCEEEEEEE
EARARGLNLVKGLEPGQRVVMSGAFFLASELAKSGFDIHNH
EHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA