Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776297

Identifier: 119776297

GI number: 119776297

Start: 3751952

End: 3753307

Strand: Direct

Name: 119776297

Synonym: Sama_3165

Alternate gene names: NA

Gene position: 3751952-3753307 (Clockwise)

Preceding gene: 119776296

Following gene: 119776304

Centisome position: 87.13

GC content: 55.46

Gene sequence:

>1356_bases
ATGAACGATGCAAAACTCAGGTACTGTGAACACCTGCGACGCTTTTCCGACCAACTGATCCATCTGCAAGCACCCATCAA
GATCCTGGATGCCATTAAGTGGCCCAGGGAGCTTGAACAGCAATTTTTCGATGCCGGAGCCAGACAATTACCGCAGGTAG
ACAAAGCCTTTTACGACAATCTTCCCCTGCCATTTGACTCCCTCGCCACCCAGAAAGCACTGAAGTCCCTTAAGCAGGAC
ATCCAAAAGACGCTGGGCAAGGACGATGCTTTAGGTAAGCTTCTGGTCGCCAACGTTGACCAATACCGTCTGGTTATCGA
TATGCTGGGCCACAGGGGAACCCCCCAATTTGGCAAGCTGAGCAAGGCGCTCTACGGCAGCGCCAGCAACAAACTCCACG
GCGACAGGCATACCCTCAGGCAGTTGGGTGACCGCCTGAGTTATATCTTCTCACTGCCCGCAGCCGCGCACATGAACAAG
CAGCATCCCAAAGAAATTGATGCAGCCAGCGCGGTTGAACACCTGGGGAGCCGTCTGGGCCGTTACTTCCACAGTGATGA
AATGCGGGTGCGCCTAAGCGACGGCATTGTGTCTGATGCTGCCGTTGGGGGCGACACAGTTAAAATCAACTCCAAAGCCA
TGTTCAGCAAGGCCGACCTCAATGTGTATGAAGTCCACGAAGGCTGGGTACACGTTGGCACAACACTGAATGGCCGGGCA
CAGCCCCACGCCACCTGGCTGAGCGTAGGCTCCCCCAGGGTAGCGGCGGCGCAGGAAGGGCTGGCCGTACTGCTGGAAAT
GCTCACCCTCAGTTCCACTCCCGGGCGCGCAAGGCGTATCAGCGATCGGGTGGCAGCGGTGGATATGGCCGAAAACGGCG
CCGACTTTATTGAAGTCTATCGCTATTTCCGCGACCAAAATCTAAGTAAAAAAGACAGTTACCGCGTGACACAGCGGGTG
TTCCGTGGCGGCATGGTGGCAGGCGGCAGCTGTTTCACCAAGGATATTTCCTATGTCCGCGGCTACGTGGAAAACGTGAA
CTTTATCCGCAGCGCCATTGCCTCGGGGATCCCGGAACTTATCCCCATGCTGTTCCTTGGCAAGCTCGCTATTGAGGATA
TTCCTACTCTGTATCTTGCCTACCGCGAGGGCATACTTGCAGGGCCAAGATACTTGCCACCCATGTTTGATGATTACAGT
GGCCTTTATGCCTGGTTTGGCTTCGCTACCGGACTTGGCAATATCAACCTTAAAGGGGTGCAGCGCCATTTTCAGCGCCA
GTTCCGCATCATCCCCAACGTGGAACCCATGTTCCCCTCGGTGGAAGATACCGAATTCGACGCCCCGGCCGACTAA

Upstream 100 bases:

>100_bases
CCCTGAAGCCCCGGCCAATCTTATAAATTCAGCCGCTTATGTGGTTCTCCATGGCGCTTGTGGCTATGATATTCCCAAGC
CGTCCCCAGAGCGTTAATGA

Downstream 100 bases:

>100_bases
AGGTGCAGCAAACAAAAAAGGATGCCGAGGCATCCTTTTTTATTACTGAGATACTGACTTTAAAGGCCACTCGCGATACG
GCTAAACATCTGCGAAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MNDAKLRYCEHLRRFSDQLIHLQAPIKILDAIKWPRELEQQFFDAGARQLPQVDKAFYDNLPLPFDSLATQKALKSLKQD
IQKTLGKDDALGKLLVANVDQYRLVIDMLGHRGTPQFGKLSKALYGSASNKLHGDRHTLRQLGDRLSYIFSLPAAAHMNK
QHPKEIDAASAVEHLGSRLGRYFHSDEMRVRLSDGIVSDAAVGGDTVKINSKAMFSKADLNVYEVHEGWVHVGTTLNGRA
QPHATWLSVGSPRVAAAQEGLAVLLEMLTLSSTPGRARRISDRVAAVDMAENGADFIEVYRYFRDQNLSKKDSYRVTQRV
FRGGMVAGGSCFTKDISYVRGYVENVNFIRSAIASGIPELIPMLFLGKLAIEDIPTLYLAYREGILAGPRYLPPMFDDYS
GLYAWFGFATGLGNINLKGVQRHFQRQFRIIPNVEPMFPSVEDTEFDAPAD

Sequences:

>Translated_451_residues
MNDAKLRYCEHLRRFSDQLIHLQAPIKILDAIKWPRELEQQFFDAGARQLPQVDKAFYDNLPLPFDSLATQKALKSLKQD
IQKTLGKDDALGKLLVANVDQYRLVIDMLGHRGTPQFGKLSKALYGSASNKLHGDRHTLRQLGDRLSYIFSLPAAAHMNK
QHPKEIDAASAVEHLGSRLGRYFHSDEMRVRLSDGIVSDAAVGGDTVKINSKAMFSKADLNVYEVHEGWVHVGTTLNGRA
QPHATWLSVGSPRVAAAQEGLAVLLEMLTLSSTPGRARRISDRVAAVDMAENGADFIEVYRYFRDQNLSKKDSYRVTQRV
FRGGMVAGGSCFTKDISYVRGYVENVNFIRSAIASGIPELIPMLFLGKLAIEDIPTLYLAYREGILAGPRYLPPMFDDYS
GLYAWFGFATGLGNINLKGVQRHFQRQFRIIPNVEPMFPSVEDTEFDAPAD
>Mature_451_residues
MNDAKLRYCEHLRRFSDQLIHLQAPIKILDAIKWPRELEQQFFDAGARQLPQVDKAFYDNLPLPFDSLATQKALKSLKQD
IQKTLGKDDALGKLLVANVDQYRLVIDMLGHRGTPQFGKLSKALYGSASNKLHGDRHTLRQLGDRLSYIFSLPAAAHMNK
QHPKEIDAASAVEHLGSRLGRYFHSDEMRVRLSDGIVSDAAVGGDTVKINSKAMFSKADLNVYEVHEGWVHVGTTLNGRA
QPHATWLSVGSPRVAAAQEGLAVLLEMLTLSSTPGRARRISDRVAAVDMAENGADFIEVYRYFRDQNLSKKDSYRVTQRV
FRGGMVAGGSCFTKDISYVRGYVENVNFIRSAIASGIPELIPMLFLGKLAIEDIPTLYLAYREGILAGPRYLPPMFDDYS
GLYAWFGFATGLGNINLKGVQRHFQRQFRIIPNVEPMFPSVEDTEFDAPAD

Specific function: Unknown

COG id: COG3930

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50421; Mature: 50421

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA