| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776291
Identifier: 119776291
GI number: 119776291
Start: 3745396
End: 3746085
Strand: Direct
Name: 119776291
Synonym: Sama_3159
Alternate gene names: NA
Gene position: 3745396-3746085 (Clockwise)
Preceding gene: 119776290
Following gene: 119776296
Centisome position: 86.98
GC content: 54.2
Gene sequence:
>690_bases ATGACCAAGGTATCCACACTCGCTCTGCTGCTTTCCTGCGCCTTTGCCGCCGTGCCAGCCAAAGCTGAATTTGAGGGCAA TATTGGGATAAGCTCTAACTACCTGTGGCGCGGTATCAGCCAAACTCAGGACAGTACTGCCGTGGATGGCGGACTGGATT ACAGCCACGAGAGTGGCTTTTACGCCGGAACCTGGGCTGCCAATGTTGACTTTGGTGATGACACTACCTTCGAGATGGAT TTTTACGGTGGTTATAGCGGCGATATCACCGAGGGCCTGAGCTTTGATGTTGGCTACCTCTACTACGCCTATCCAGACGC AGACGCCGACATCGACTTTGGTGAAGTCTATGCCAGCCTCACGTGGCAGTGGTTAACCGTGGGTTATGCCCTTGTGGTCA ATGGCGGCGACGATATGGCCCCAGATGACTTGTCCGATGATGATATGGACTATCTCAGCGCCGATGTCGCCATACCGCTG GCGGAAACCCTGAGTCTCGACTTCCACTATGGCTATTCCAGCGGGGATATCGCTTTAGGCTGGTATGGCGAGTCAAGCTA CAGCGATTATGCCGTTTCACTGACCAAGAGCACTGAGCTTGGCGATGTCAGCTTTACTGTATCTGACACCGACCTTGCCG AGGATGACCCCAAAGTGGTGCTGCGCTGGTCATACGGCTTCGCACTCTGA
Upstream 100 bases:
>100_bases CAATCCTTTTGTAAACAGCAAGTTAAAAAATGGCATAACCTTGGCTTTAGTTATTCCCGACCAATACAAGTACACACAAT AATCATTGAAGGGGAATATG
Downstream 100 bases:
>100_bases GTATTGAGATCTGACTGAAGTCAGGCAATCACCTGGTGGTTGGCCCGGCGGGCCGCCACCACTTTTTCAATATACTCAAC GATGGGTTCAGCAACCTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MTKVSTLALLLSCAFAAVPAKAEFEGNIGISSNYLWRGISQTQDSTAVDGGLDYSHESGFYAGTWAANVDFGDDTTFEMD FYGGYSGDITEGLSFDVGYLYYAYPDADADIDFGEVYASLTWQWLTVGYALVVNGGDDMAPDDLSDDDMDYLSADVAIPL AETLSLDFHYGYSSGDIALGWYGESSYSDYAVSLTKSTELGDVSFTVSDTDLAEDDPKVVLRWSYGFAL
Sequences:
>Translated_229_residues MTKVSTLALLLSCAFAAVPAKAEFEGNIGISSNYLWRGISQTQDSTAVDGGLDYSHESGFYAGTWAANVDFGDDTTFEMD FYGGYSGDITEGLSFDVGYLYYAYPDADADIDFGEVYASLTWQWLTVGYALVVNGGDDMAPDDLSDDDMDYLSADVAIPL AETLSLDFHYGYSSGDIALGWYGESSYSDYAVSLTKSTELGDVSFTVSDTDLAEDDPKVVLRWSYGFAL >Mature_228_residues TKVSTLALLLSCAFAAVPAKAEFEGNIGISSNYLWRGISQTQDSTAVDGGLDYSHESGFYAGTWAANVDFGDDTTFEMDF YGGYSGDITEGLSFDVGYLYYAYPDADADIDFGEVYASLTWQWLTVGYALVVNGGDDMAPDDLSDDDMDYLSADVAIPLA ETLSLDFHYGYSSGDIALGWYGESSYSDYAVSLTKSTELGDVSFTVSDTDLAEDDPKVVLRWSYGFAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24811; Mature: 24680
Theoretical pI: Translated: 3.38; Mature: 3.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVSTLALLLSCAFAAVPAKAEFEGNIGISSNYLWRGISQTQDSTAVDGGLDYSHESGF CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCE YAGTWAANVDFGDDTTFEMDFYGGYSGDITEGLSFDVGYLYYAYPDADADIDFGEVYASL EEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEECCEEEEEEECCCCCCCCHHHHHHHH TWQWLTVGYALVVNGGDDMAPDDLSDDDMDYLSADVAIPLAETLSLDFHYGYSSGDIALG EEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCEEEEEHHHEEEEEEECCCCCCEEEE WYGESSYSDYAVSLTKSTELGDVSFTVSDTDLAEDDPKVVLRWSYGFAL EECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC >Mature Secondary Structure TKVSTLALLLSCAFAAVPAKAEFEGNIGISSNYLWRGISQTQDSTAVDGGLDYSHESGF CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCE YAGTWAANVDFGDDTTFEMDFYGGYSGDITEGLSFDVGYLYYAYPDADADIDFGEVYASL EEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEECCEEEEEEECCCCCCCCHHHHHHHH TWQWLTVGYALVVNGGDDMAPDDLSDDDMDYLSADVAIPLAETLSLDFHYGYSSGDIALG EEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCEEEEEHHHEEEEEEECCCCCCEEEE WYGESSYSDYAVSLTKSTELGDVSFTVSDTDLAEDDPKVVLRWSYGFAL EECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA