Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776259

Identifier: 119776259

GI number: 119776259

Start: 3708198

End: 3708737

Strand: Reverse

Name: 119776259

Synonym: Sama_3127

Alternate gene names: NA

Gene position: 3708737-3708198 (Counterclockwise)

Preceding gene: 119776260

Following gene: 119776257

Centisome position: 86.13

GC content: 57.04

Gene sequence:

>540_bases
ATGACACGACTGGTCATTTTGCTGTTATCCCTGGTGGGCGCGTTTTTCGCTTACCGTGAGCTCTTTGCCCCCCTGCCGCT
TGAAAGCCATTTTCTGGCCAGTGTGCCCGTTAAGGTGCGCATGTTGCCCCAGCCCAATACCGCCTCCAAAGTCACGGGTG
ACATCAGCGTTGAGCAGGTTGTCAGTGCCAGTTCGCCCCATGCCGACATGACACTGCTGGTGCTGGCCATGGGCACCGCC
TACGAGGTGTTTGATGAGCGGGATATCAATGCCTTGTCCCGTGAAGACTTGAGCAGTTTAAGCCGCCGTTTCGGCACCGA
CACCGGATTGGATGCGGCGCTGGTACGGCGCGGCTTTATCGAACATCAGGGCAAGAAGGGCTATGAGCTGGTGGTCAATC
TGGGGCGGGACAAGGGCGAAATGGTGCAGCGCATCTACACCCACGACAACCATCTGCTGATGTTGATGGCCAGTTACGCC
TCCGATGCCAGAGAGCGGAAAACCGCCATGGCGTTTCTCGACTCACTGGAGTTTTTGTAA

Upstream 100 bases:

>100_bases
GGGTTGGCCGGATAAGTCAGCCTTTTGCCTCACGCGTGTCACAGCCTTGGCTGTTACTATGGTCGGCCACACCTCCCTGT
CGGCTTCAAAGGATTGAACC

Downstream 100 bases:

>100_bases
GGCGCTGAGCGGGAGCCGGTAAACGGTAAACGGTAAACGGTAAACGGTAAACGGTAAACGGTAGACGGTAAACGGTAGAC
GGTAGACGGTAGACGGTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQVVSASSPHADMTLLVLAMGTA
YEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFIEHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYA
SDARERKTAMAFLDSLEFL

Sequences:

>Translated_179_residues
MTRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQVVSASSPHADMTLLVLAMGTA
YEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFIEHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYA
SDARERKTAMAFLDSLEFL
>Mature_178_residues
TRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQVVSASSPHADMTLLVLAMGTAY
EVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFIEHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYAS
DARERKTAMAFLDSLEFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19921; Mature: 19790

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCEEEEECCCCCCCHHCCCCCHHHHH
VSASSPHADMTLLVLAMGTAYEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFI
HHCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYASDARERKTAMAFLDSLEFL
HCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCEEEEECCCCCCCHHCCCCCHHHHH
VSASSPHADMTLLVLAMGTAYEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFI
HHCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYASDARERKTAMAFLDSLEFL
HCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA