| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776259
Identifier: 119776259
GI number: 119776259
Start: 3708198
End: 3708737
Strand: Reverse
Name: 119776259
Synonym: Sama_3127
Alternate gene names: NA
Gene position: 3708737-3708198 (Counterclockwise)
Preceding gene: 119776260
Following gene: 119776257
Centisome position: 86.13
GC content: 57.04
Gene sequence:
>540_bases ATGACACGACTGGTCATTTTGCTGTTATCCCTGGTGGGCGCGTTTTTCGCTTACCGTGAGCTCTTTGCCCCCCTGCCGCT TGAAAGCCATTTTCTGGCCAGTGTGCCCGTTAAGGTGCGCATGTTGCCCCAGCCCAATACCGCCTCCAAAGTCACGGGTG ACATCAGCGTTGAGCAGGTTGTCAGTGCCAGTTCGCCCCATGCCGACATGACACTGCTGGTGCTGGCCATGGGCACCGCC TACGAGGTGTTTGATGAGCGGGATATCAATGCCTTGTCCCGTGAAGACTTGAGCAGTTTAAGCCGCCGTTTCGGCACCGA CACCGGATTGGATGCGGCGCTGGTACGGCGCGGCTTTATCGAACATCAGGGCAAGAAGGGCTATGAGCTGGTGGTCAATC TGGGGCGGGACAAGGGCGAAATGGTGCAGCGCATCTACACCCACGACAACCATCTGCTGATGTTGATGGCCAGTTACGCC TCCGATGCCAGAGAGCGGAAAACCGCCATGGCGTTTCTCGACTCACTGGAGTTTTTGTAA
Upstream 100 bases:
>100_bases GGGTTGGCCGGATAAGTCAGCCTTTTGCCTCACGCGTGTCACAGCCTTGGCTGTTACTATGGTCGGCCACACCTCCCTGT CGGCTTCAAAGGATTGAACC
Downstream 100 bases:
>100_bases GGCGCTGAGCGGGAGCCGGTAAACGGTAAACGGTAAACGGTAAACGGTAAACGGTAAACGGTAGACGGTAAACGGTAGAC GGTAGACGGTAGACGGTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQVVSASSPHADMTLLVLAMGTA YEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFIEHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYA SDARERKTAMAFLDSLEFL
Sequences:
>Translated_179_residues MTRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQVVSASSPHADMTLLVLAMGTA YEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFIEHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYA SDARERKTAMAFLDSLEFL >Mature_178_residues TRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQVVSASSPHADMTLLVLAMGTAY EVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFIEHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYAS DARERKTAMAFLDSLEFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19921; Mature: 19790
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQV CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCEEEEECCCCCCCHHCCCCCHHHHH VSASSPHADMTLLVLAMGTAYEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFI HHCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH EHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYASDARERKTAMAFLDSLEFL HCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TRLVILLLSLVGAFFAYRELFAPLPLESHFLASVPVKVRMLPQPNTASKVTGDISVEQV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCEEEEECCCCCCCHHCCCCCHHHHH VSASSPHADMTLLVLAMGTAYEVFDERDINALSREDLSSLSRRFGTDTGLDAALVRRGFI HHCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH EHQGKKGYELVVNLGRDKGEMVQRIYTHDNHLLMLMASYASDARERKTAMAFLDSLEFL HCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA