Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776255

Identifier: 119776255

GI number: 119776255

Start: 3703217

End: 3703966

Strand: Direct

Name: 119776255

Synonym: Sama_3123

Alternate gene names: NA

Gene position: 3703217-3703966 (Clockwise)

Preceding gene: 119776253

Following gene: 119776258

Centisome position: 86.0

GC content: 39.6

Gene sequence:

>750_bases
ATGAAATATAAAGGATACTGGATTTTAGTATTTATTATTGCCTTATTGATATCTCTTGCATTTGGTTTGGCCCCATACAT
ACTTTACAGCCTAGGTTTTATCAATCCAGACCATCAAAACGTAATCAAGATTGTAGAGCCTGTAGGTGGAATGTTCGGGC
CCGCAAGCGCTTTTTTTTCTGGCTTCGCACTCATAGCAGTGATTATTAGCATTCAGCAGCAGCGAGAAGCGTTGAAAATA
CAAGCGGAAGAGTTAGAGCTAACCAGGAAAGAAATTGGAGAGTCTACAGAAGCTCAACAAGAAATGGCAAAGCATCAAAA
GAATGCTATTAGTCTGCAGGTTATTATGCCATTCATGAATGAGATATCGTCTGCTGAAATGAGAAAAGCAATTATCGAGC
TATCTAAGTTTGGAAGAATGGAAAATTTTGATGCCATATACTATGGTTTGCTCCACAGGAATAAGTCAGGGTCACTTGAA
GGTGCTGATTTAGAGTTTTTCGAAACTGTTGATAACGCTAGAAGAAAATTTGTTGGACTGTTTCATAAAATGCAAAGACT
GTCTGCTACAGGTGTAGTAGACAATGAGATAGTGCGGGTTGTTTTAGGTCCAGACAGTTGCTGGCTTTTGCTAAATATTG
TAGAACCTCTCGATGCGAAGATTCGTCCGAATTACTCTACGGTTACTTTTGATTTTGCAAGAGGGCTCTATAGCGCTGAA
ACTGTTGACGTCAAAGGGAGACATGACTGA

Upstream 100 bases:

>100_bases
ATACAGAGGAAAGTCATTAGAAAATTATAATTAATTTCAATAAATCGTAACAACCTTAATCCACCATGTTAATTAATAAC
ACCACTCATGGAATTTAGCT

Downstream 100 bases:

>100_bases
AAGATTACTCAAGCGCATCACGATATGCATCAAACGAAAGCTAAAATGACCCTCCTATAGCTGATCCAATAAGTTTTAAG
GTCAACTCTGGCATGCTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKYKGYWILVFIIALLISLAFGLAPYILYSLGFINPDHQNVIKIVEPVGGMFGPASAFFSGFALIAVIISIQQQREALKI
QAEELELTRKEIGESTEAQQEMAKHQKNAISLQVIMPFMNEISSAEMRKAIIELSKFGRMENFDAIYYGLLHRNKSGSLE
GADLEFFETVDNARRKFVGLFHKMQRLSATGVVDNEIVRVVLGPDSCWLLLNIVEPLDAKIRPNYSTVTFDFARGLYSAE
TVDVKGRHD

Sequences:

>Translated_249_residues
MKYKGYWILVFIIALLISLAFGLAPYILYSLGFINPDHQNVIKIVEPVGGMFGPASAFFSGFALIAVIISIQQQREALKI
QAEELELTRKEIGESTEAQQEMAKHQKNAISLQVIMPFMNEISSAEMRKAIIELSKFGRMENFDAIYYGLLHRNKSGSLE
GADLEFFETVDNARRKFVGLFHKMQRLSATGVVDNEIVRVVLGPDSCWLLLNIVEPLDAKIRPNYSTVTFDFARGLYSAE
TVDVKGRHD
>Mature_249_residues
MKYKGYWILVFIIALLISLAFGLAPYILYSLGFINPDHQNVIKIVEPVGGMFGPASAFFSGFALIAVIISIQQQREALKI
QAEELELTRKEIGESTEAQQEMAKHQKNAISLQVIMPFMNEISSAEMRKAIIELSKFGRMENFDAIYYGLLHRNKSGSLE
GADLEFFETVDNARRKFVGLFHKMQRLSATGVVDNEIVRVVLGPDSCWLLLNIVEPLDAKIRPNYSTVTFDFARGLYSAE
TVDVKGRHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28042; Mature: 28042

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKGYWILVFIIALLISLAFGLAPYILYSLGFINPDHQNVIKIVEPVGGMFGPASAFFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
GFALIAVIISIQQQREALKIQAEELELTRKEIGESTEAQQEMAKHQKNAISLQVIMPFMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH
EISSAEMRKAIIELSKFGRMENFDAIYYGLLHRNKSGSLEGADLEFFETVDNARRKFVGL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FHKMQRLSATGVVDNEIVRVVLGPDSCWLLLNIVEPLDAKIRPNYSTVTFDFARGLYSAE
HHHHHHHHHCCCCCCCEEEEEECCCCCEEHEEHHCCCCCCCCCCCCEEEHHHHHCCCCCC
TVDVKGRHD
EEECCCCCC
>Mature Secondary Structure
MKYKGYWILVFIIALLISLAFGLAPYILYSLGFINPDHQNVIKIVEPVGGMFGPASAFFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
GFALIAVIISIQQQREALKIQAEELELTRKEIGESTEAQQEMAKHQKNAISLQVIMPFMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH
EISSAEMRKAIIELSKFGRMENFDAIYYGLLHRNKSGSLEGADLEFFETVDNARRKFVGL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FHKMQRLSATGVVDNEIVRVVLGPDSCWLLLNIVEPLDAKIRPNYSTVTFDFARGLYSAE
HHHHHHHHHCCCCCCCEEEEEECCCCCEEHEEHHCCCCCCCCCCCCEEEHHHHHCCCCCC
TVDVKGRHD
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA