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The map label for this gene is yddU [C]

Identifier: 119776247

GI number: 119776247

Start: 3692979

End: 3695285

Strand: Direct

Name: yddU [C]

Synonym: Sama_3115

Alternate gene names: 119776247

Gene position: 3692979-3695285 (Clockwise)

Preceding gene: 119776246

Following gene: 119776248

Centisome position: 85.76

GC content: 51.24

Gene sequence:

>2307_bases
ATGTTAAATAGTTTTCGTGCCCGGCTGATTTTGGTTTTCTTTACCGTGCTGACTTTGGTGCAGTTTGCCACGGCATTTTC
GGTGCTGACGGCAACCCAGAGAGATAACTTTTTACAGCAACAAAAGAGCCTTGAAATCGGCGCGAATGTGTTTCGTGAAG
TGCTGTCCAATCGCGGTATTCAGCTCAGTCAAAGCCTGTCGGTGCTCAGTGCCGACTTTGGCTTTAAGCGTGCCATTGCA
ACGAGAGAGCAAGAAACCATTGAGTCGGTATTGTCCAATCATGGTGCCCGTATCGGGGCTGATGCGGCCGTCTTGTTGTC
ACCCAAGGGAGAACTGTTAACCTCAAGCCTGCCGGGGCTGACGCAGGATGATATACAGTCGCTGTTCCAATTGACCATCA
ACAACGCCAATGCCCTGGCGATTCTCGAGTTTGACCATGCCAGTTATCAATTCGTGCAGCAGCCCGTGAAAGCCCCAACC
CTGATAGCCTGGGTTGGCATGGGCTTTCTGCTCGATGAAAAAGTGGCCAGCCAAGCCAAAGCCATTACCGGAATTGATGT
CAGCTTTGTTAATCAAACCAAGGGCCGGACAGAAATAGCCTCCACCTTATCCAGCAGCGAAAAACAGACAGTGATTGCAC
AGGCAAACCAATTCCCAAGCCTGTTAACGCTGCCCAGCGAGACCATTCCTGCGGACCATTTATCCATGGCAATCAAGCTG
TATGAGCATAATGGCAACCAGTTGGCGCTGCTGCACCAGTCAAACCTCAAGTGGCAACAAAGTTATCAGCAGCTGCGCAA
TAACATGCTCGCTATCTTTGCCCTGACACTGGCGCTGGCGATTGCCGTGGCCATTTGGTTGTCGGGCAGTTTGACTGAGC
CAGTTCATCGATTGGTGCTATATGCCCGTCAAATTGGTCAGGGTAAGCAGCCGGAAAGCATTCAGGGTGCCCCAGCGGAA
TTACGTGTCTTGGCCAAAAGCTTGTCTTTGATGCGGGATGATATTGAGGCGCGCGAAAAAGACTTGGTATACCAGTCTCG
CCACGACAGTTTGACAGGCTTGCTGAATCGTTTCGCGGCAAAACAGTATTTAACCGACCTTAAACAGCATCTGTCCGGCA
CCATAGTATTGCTGGATATCAAGCATTTTCGCCATATCAACGACATTATTGGGTTTGCCAACGCCGATGCCTTATTGCTG
CTGTTTGCCCGCCGTCTGGAGCAGCTGGCACCCAAAGCGGATATGCTGGCCCGGTTGGATGGCGATTCGTTTTTACTCCT
TTACCGCCAGAGTATTTCGCACGACCTCTTACTCAAATCCCTGGATATGTTGGAGGCGCCCTTTCCTATTCAGGGTTCCA
ATATCTCCCTTGGGGTGCGGGCAGGATTGCTCGAAATCGATGGCAATGGTGCCGACATTGATGTGTTAATGCGCCGCGCC
GAAATTGCCCTCAATCAGGCCTGTCTTCAGGAGCAGCGTATCGTCAGTTATCGTGCAGGCGACGATGAAAAGTACCAGCG
AGAACTTACGCTTATCCGTGATTTACCCATAGGGCTGGCCCAGGACCAACTCTATCTGGTGTTTCAGCCCAAAATTGACC
TGCGCCTCAATCGCTGCACGGGTGCCGAGGCATTAATTCGATGGCAACACCCAACGCTGGGTTTTATTCCCCCCGATGAA
TTTATTCAGCTCGCCGAAAACTCGGGCAACATTGATATCATCAGCCAATGGGTATTGAAGCAAGCCATCAAGCAGTTGGT
TGCATGGCAGCAGCGGGGGGTGGCGCTGAAATTAGCCATTAACCTCTCGGCCCATGATTTGAGTGATACCCGCTTGCCAA
ACCAGATTTCCACCCTCTTAAAAGACAATCATCTGCCAAGCGGCGTGCTCTGTATTGAAGTTACCGAAGGCGCTGTGATG
ACAGACGCGCAAACCGTAGTGGGTGTATTGCAGCAATTCCGCGACATGGGTGTGTCGGTTGCTATTGATGATTTTGGTAC
CGGGCATTCATCGTTGGCGTATTTGAAAATGTTGCCCGTCGATGAAGTGAAAATTGACCGCAGCTTCATCCAACATATCC
ACAGCAACAGCCAGGACGCCATGATAGTCAATACCAGTATTCAGCTGATCCACGGCCTGGGTTTCAGCGTGGTGGCCGAG
GGCGTCGAAGATGAGGCAGGGGTTGACATGCTTCGCAAGCTTAACTGCGACATCATCCAGGGCTACGTATTTTCCAAGCC
CTTGAAAGCGGCCGAATTTGACCAGTGGTTTGACGCCTTTCATGGAAAAGGCACCGGAGAGATTTGA

Upstream 100 bases:

>100_bases
GAACTCAGCATAACCACAGCGGCACAGACGCTCACGCTGGCCATGGATATCGAACGTCAGGCTAAACCCTCAGCCCCACC
ATCGGGATTTGGTCAATTCG

Downstream 100 bases:

>100_bases
GCGTTTGCGCCTGAAGGCGTTAAACACGGTATTCGCCTTCGAATGCAAGCTAATCGCGTATTGAGTGAGTATACCCATGA
ACACAATGAAGTTGAGCTTA

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MLNSFRARLILVFFTVLTLVQFATAFSVLTATQRDNFLQQQKSLEIGANVFREVLSNRGIQLSQSLSVLSADFGFKRAIA
TREQETIESVLSNHGARIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFQLTINNANALAILEFDHASYQFVQQPVKAPT
LIAWVGMGFLLDEKVASQAKAITGIDVSFVNQTKGRTEIASTLSSSEKQTVIAQANQFPSLLTLPSETIPADHLSMAIKL
YEHNGNQLALLHQSNLKWQQSYQQLRNNMLAIFALTLALAIAVAIWLSGSLTEPVHRLVLYARQIGQGKQPESIQGAPAE
LRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQYLTDLKQHLSGTIVLLDIKHFRHINDIIGFANADALLL
LFARRLEQLAPKADMLARLDGDSFLLLYRQSISHDLLLKSLDMLEAPFPIQGSNISLGVRAGLLEIDGNGADIDVLMRRA
EIALNQACLQEQRIVSYRAGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKIDLRLNRCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIISQWVLKQAIKQLVAWQQRGVALKLAINLSAHDLSDTRLPNQISTLLKDNHLPSGVLCIEVTEGAVM
TDAQTVVGVLQQFRDMGVSVAIDDFGTGHSSLAYLKMLPVDEVKIDRSFIQHIHSNSQDAMIVNTSIQLIHGLGFSVVAE
GVEDEAGVDMLRKLNCDIIQGYVFSKPLKAAEFDQWFDAFHGKGTGEI

Sequences:

>Translated_768_residues
MLNSFRARLILVFFTVLTLVQFATAFSVLTATQRDNFLQQQKSLEIGANVFREVLSNRGIQLSQSLSVLSADFGFKRAIA
TREQETIESVLSNHGARIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFQLTINNANALAILEFDHASYQFVQQPVKAPT
LIAWVGMGFLLDEKVASQAKAITGIDVSFVNQTKGRTEIASTLSSSEKQTVIAQANQFPSLLTLPSETIPADHLSMAIKL
YEHNGNQLALLHQSNLKWQQSYQQLRNNMLAIFALTLALAIAVAIWLSGSLTEPVHRLVLYARQIGQGKQPESIQGAPAE
LRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQYLTDLKQHLSGTIVLLDIKHFRHINDIIGFANADALLL
LFARRLEQLAPKADMLARLDGDSFLLLYRQSISHDLLLKSLDMLEAPFPIQGSNISLGVRAGLLEIDGNGADIDVLMRRA
EIALNQACLQEQRIVSYRAGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKIDLRLNRCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIISQWVLKQAIKQLVAWQQRGVALKLAINLSAHDLSDTRLPNQISTLLKDNHLPSGVLCIEVTEGAVM
TDAQTVVGVLQQFRDMGVSVAIDDFGTGHSSLAYLKMLPVDEVKIDRSFIQHIHSNSQDAMIVNTSIQLIHGLGFSVVAE
GVEDEAGVDMLRKLNCDIIQGYVFSKPLKAAEFDQWFDAFHGKGTGEI
>Mature_768_residues
MLNSFRARLILVFFTVLTLVQFATAFSVLTATQRDNFLQQQKSLEIGANVFREVLSNRGIQLSQSLSVLSADFGFKRAIA
TREQETIESVLSNHGARIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFQLTINNANALAILEFDHASYQFVQQPVKAPT
LIAWVGMGFLLDEKVASQAKAITGIDVSFVNQTKGRTEIASTLSSSEKQTVIAQANQFPSLLTLPSETIPADHLSMAIKL
YEHNGNQLALLHQSNLKWQQSYQQLRNNMLAIFALTLALAIAVAIWLSGSLTEPVHRLVLYARQIGQGKQPESIQGAPAE
LRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQYLTDLKQHLSGTIVLLDIKHFRHINDIIGFANADALLL
LFARRLEQLAPKADMLARLDGDSFLLLYRQSISHDLLLKSLDMLEAPFPIQGSNISLGVRAGLLEIDGNGADIDVLMRRA
EIALNQACLQEQRIVSYRAGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKIDLRLNRCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIISQWVLKQAIKQLVAWQQRGVALKLAINLSAHDLSDTRLPNQISTLLKDNHLPSGVLCIEVTEGAVM
TDAQTVVGVLQQFRDMGVSVAIDDFGTGHSSLAYLKMLPVDEVKIDRSFIQHIHSNSQDAMIVNTSIQLIHGLGFSVVAE
GVEDEAGVDMLRKLNCDIIQGYVFSKPLKAAEFDQWFDAFHGKGTGEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=32.7944572748268, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=30.6976744186047, Blast_Score=209, Evalue=7e-55,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=36.7588932806324, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI226510982, Length=393, Percent_Identity=27.4809160305344, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1787055, Length=476, Percent_Identity=25, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=31.8367346938775, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=30.8, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1786507, Length=263, Percent_Identity=30.0380228136882, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=33.739837398374, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI87081845, Length=224, Percent_Identity=33.9285714285714, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI87081743, Length=229, Percent_Identity=28.82096069869, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082096, Length=356, Percent_Identity=25.561797752809, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=449, Percent_Identity=24.2761692650334, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=33.1395348837209, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 84947; Mature: 84947

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSFRARLILVFFTVLTLVQFATAFSVLTATQRDNFLQQQKSLEIGANVFREVLSNRGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QLSQSLSVLSADFGFKRAIATREQETIESVLSNHGARIGADAAVLLSPKGELLTSSLPGL
EEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCHHHHCCCCCC
TQDDIQSLFQLTINNANALAILEFDHASYQFVQQPVKAPTLIAWVGMGFLLDEKVASQAK
CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AITGIDVSFVNQTKGRTEIASTLSSSEKQTVIAQANQFPSLLTLPSETIPADHLSMAIKL
HHCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCHHHHHEEEEE
YEHNGNQLALLHQSNLKWQQSYQQLRNNMLAIFALTLALAIAVAIWLSGSLTEPVHRLVL
EECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YARQIGQGKQPESIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAA
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQYLTDLKQHLSGTIVLLDIKHFRHINDIIGFANADALLLLFARRLEQLAPKADMLARLD
HHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHCC
GDSFLLLYRQSISHDLLLKSLDMLEAPFPIQGSNISLGVRAGLLEIDGNGADIDVLMRRA
CCCEEEEEHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
EIALNQACLQEQRIVSYRAGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKIDLRLNRCT
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEECCC
GAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIISQWVLKQAIKQLVAWQQRGVALKLAI
CCHHHEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
NLSAHDLSDTRLPNQISTLLKDNHLPSGVLCIEVTEGAVMTDAQTVVGVLQQFRDMGVSV
EECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCCCEE
AIDDFGTGHSSLAYLKMLPVDEVKIDRSFIQHIHSNSQDAMIVNTSIQLIHGLGFSVVAE
EEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHHHHHC
GVEDEAGVDMLRKLNCDIIQGYVFSKPLKAAEFDQWFDAFHGKGTGEI
CCCCHHHHHHHHHCCCHHHCCHHHCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLNSFRARLILVFFTVLTLVQFATAFSVLTATQRDNFLQQQKSLEIGANVFREVLSNRGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QLSQSLSVLSADFGFKRAIATREQETIESVLSNHGARIGADAAVLLSPKGELLTSSLPGL
EEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCHHHHCCCCCC
TQDDIQSLFQLTINNANALAILEFDHASYQFVQQPVKAPTLIAWVGMGFLLDEKVASQAK
CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
AITGIDVSFVNQTKGRTEIASTLSSSEKQTVIAQANQFPSLLTLPSETIPADHLSMAIKL
HHCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCHHHHHEEEEE
YEHNGNQLALLHQSNLKWQQSYQQLRNNMLAIFALTLALAIAVAIWLSGSLTEPVHRLVL
EECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YARQIGQGKQPESIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAA
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQYLTDLKQHLSGTIVLLDIKHFRHINDIIGFANADALLLLFARRLEQLAPKADMLARLD
HHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHCC
GDSFLLLYRQSISHDLLLKSLDMLEAPFPIQGSNISLGVRAGLLEIDGNGADIDVLMRRA
CCCEEEEEHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
EIALNQACLQEQRIVSYRAGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKIDLRLNRCT
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEECCC
GAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIISQWVLKQAIKQLVAWQQRGVALKLAI
CCHHHEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
NLSAHDLSDTRLPNQISTLLKDNHLPSGVLCIEVTEGAVMTDAQTVVGVLQQFRDMGVSV
EECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCCCEE
AIDDFGTGHSSLAYLKMLPVDEVKIDRSFIQHIHSNSQDAMIVNTSIQLIHGLGFSVVAE
EEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHHHHHC
GVEDEAGVDMLRKLNCDIIQGYVFSKPLKAAEFDQWFDAFHGKGTGEI
CCCCHHHHHHHHHCCCHHHCCHHHCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]