| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776226
Identifier: 119776226
GI number: 119776226
Start: 3668286
End: 3668693
Strand: Reverse
Name: 119776226
Synonym: Sama_3094
Alternate gene names: NA
Gene position: 3668693-3668286 (Counterclockwise)
Preceding gene: 119776227
Following gene: 119776213
Centisome position: 85.2
GC content: 53.43
Gene sequence:
>408_bases ATGGCGGTTGAGCGTCTTGGTGACAATGTACGCTTGCTGTCGTTGCAATACCAGGATCACGCCTTGAAGCTTTCGCTCAA TATCGAAGGCCAATGCTGTGAGCTGACATTTGAAAAATTATTGGGATTCAGAATGTTGGATGAGGGCGATCTGCTTGAGT ACTGGGCAGAGCTGAGCCTGTCCAACGGTTGGTTGTATGAGGTGTCTGAAGGGGGCTGGCTGGAGCAGGAAAGCCTGCGA AGTGGCTTTATGGCCAGCAGCCATCATGCTCCGCGGGAGTTTTTGGTGGTGACCGAGAAGGAGTGTATCTCAGTGCTCAC CCTGGCGCTGCAGCCTCAGGTGTGCTGGTGTGATTGCCAGCAAGCCATGGAGTACACCCCACTGCCCAGTGACACTTCAA CGCATTAA
Upstream 100 bases:
>100_bases TTGTGTTGCCGGACTTGCAAGATAAAAAATAAATCATTTAAATGAAAAGTAACTTTTTATCCAGGAGTCCGGCGCTATGG GTCATCCTCGTGGAGTCGCA
Downstream 100 bases:
>100_bases AAATGCCGTCGCCAGGCCCAGAAAGGCAAACAGCCCTATCACGTCGGTGACAGTGGTCAGCACCATACCACCGGCCAATG CCGGGTCTATTTTCAATCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MAVERLGDNVRLLSLQYQDHALKLSLNIEGQCCELTFEKLLGFRMLDEGDLLEYWAELSLSNGWLYEVSEGGWLEQESLR SGFMASSHHAPREFLVVTEKECISVLTLALQPQVCWCDCQQAMEYTPLPSDTSTH
Sequences:
>Translated_135_residues MAVERLGDNVRLLSLQYQDHALKLSLNIEGQCCELTFEKLLGFRMLDEGDLLEYWAELSLSNGWLYEVSEGGWLEQESLR SGFMASSHHAPREFLVVTEKECISVLTLALQPQVCWCDCQQAMEYTPLPSDTSTH >Mature_134_residues AVERLGDNVRLLSLQYQDHALKLSLNIEGQCCELTFEKLLGFRMLDEGDLLEYWAELSLSNGWLYEVSEGGWLEQESLRS GFMASSHHAPREFLVVTEKECISVLTLALQPQVCWCDCQQAMEYTPLPSDTSTH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15374; Mature: 15242
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVERLGDNVRLLSLQYQDHALKLSLNIEGQCCELTFEKLLGFRMLDEGDLLEYWAELSL CCCHHCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHCEECCCCCCHHHHHHHHCC SNGWLYEVSEGGWLEQESLRSGFMASSHHAPREFLVVTEKECISVLTLALQPQVCWCDCQ CCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEECHH QAMEYTPLPSDTSTH HHHCCCCCCCCCCCC >Mature Secondary Structure AVERLGDNVRLLSLQYQDHALKLSLNIEGQCCELTFEKLLGFRMLDEGDLLEYWAELSL CCHHCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHCEECCCCCCHHHHHHHHCC SNGWLYEVSEGGWLEQESLRSGFMASSHHAPREFLVVTEKECISVLTLALQPQVCWCDCQ CCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEECHH QAMEYTPLPSDTSTH HHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA