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The map label for this gene is yrbD [C]

Identifier: 119776211

GI number: 119776211

Start: 3656766

End: 3657236

Strand: Reverse

Name: yrbD [C]

Synonym: Sama_3079

Alternate gene names: 119776211

Gene position: 3657236-3656766 (Counterclockwise)

Preceding gene: 119776212

Following gene: 119776210

Centisome position: 84.93

GC content: 53.72

Gene sequence:

>471_bases
ATGTTGTCACGGAAAGTTGAGATTTGGGTTGGTTTGTTCCTGCTTGCGGGCATCGCCGCCTTTTTGGTGTTGGTCTTTAA
GGTGGCTAATGTTGAGGTGCAGGCGGGAAACAGCAGCTACACCCTCTATGCCAGATTTGCCAATGTGGGCGGTCTGAAGG
TGCGTTCGCCGGTGAAGGTTGGCGGTGTGGTCGTGGGGCGGGTCAGTAAGATTGAACTCGACCCCGAGCGGCTGGTTGCT
GTGGTCAGTCTGTCCATGGACGGCCGCTATCGCAATTTTCCGGAAACCAGCAGCCTGTCTATCCTCACATCCGGCTTGCT
GGGTGAGCAATTCCTGGGCTTAACCCCAGGGTTTGTCGATGACGATATTGCCATGTTGAAAGACGGAGACCGGATTGCTG
ATACCAAGTCGGCGCTGGTATTGGAAGATCTGATAGGGCAATTCCTTTACAGCATGGGTTCCAAGGATTAA

Upstream 100 bases:

>100_bases
CAATCGAGTCTTGCCGTACTGGCATTGGATTTTTTGCTGACCGCCCTCATGTTTGGCTAATGCCAGGCGTTCAGCTTGCT
GCAAGGAGTGAAACTTTAGC

Downstream 100 bases:

>100_bases
TCGGGAGAATCACGATGTTTAGAGCAGTACTCACGTTAATTGTCAGCCTCTTTTGTATTCAGGTTCAGGCTGAAACCGTG
GACAGTAAAAACCCCTACAA

Product: mce-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLSRKVEIWVGLFLLAGIAAFLVLVFKVANVEVQAGNSSYTLYARFANVGGLKVRSPVKVGGVVVGRVSKIELDPERLVA
VVSLSMDGRYRNFPETSSLSILTSGLLGEQFLGLTPGFVDDDIAMLKDGDRIADTKSALVLEDLIGQFLYSMGSKD

Sequences:

>Translated_156_residues
MLSRKVEIWVGLFLLAGIAAFLVLVFKVANVEVQAGNSSYTLYARFANVGGLKVRSPVKVGGVVVGRVSKIELDPERLVA
VVSLSMDGRYRNFPETSSLSILTSGLLGEQFLGLTPGFVDDDIAMLKDGDRIADTKSALVLEDLIGQFLYSMGSKD
>Mature_156_residues
MLSRKVEIWVGLFLLAGIAAFLVLVFKVANVEVQAGNSSYTLYARFANVGGLKVRSPVKVGGVVVGRVSKIELDPERLVA
VVSLSMDGRYRNFPETSSLSILTSGLLGEQFLGLTPGFVDDDIAMLKDGDRIADTKSALVLEDLIGQFLYSMGSKD

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=157, Percent_Identity=59.8726114649682, Blast_Score=169, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16802; Mature: 16802

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRKVEIWVGLFLLAGIAAFLVLVFKVANVEVQAGNSSYTLYARFANVGGLKVRSPVKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEEECCCCCEEECCCCEE
GGVVVGRVSKIELDPERLVAVVSLSMDGRYRNFPETSSLSILTSGLLGEQFLGLTPGFVD
CCEEEECEEEEEECHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
DDIAMLKDGDRIADTKSALVLEDLIGQFLYSMGSKD
CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSRKVEIWVGLFLLAGIAAFLVLVFKVANVEVQAGNSSYTLYARFANVGGLKVRSPVKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEEECCCCCEEECCCCEE
GGVVVGRVSKIELDPERLVAVVSLSMDGRYRNFPETSSLSILTSGLLGEQFLGLTPGFVD
CCEEEECEEEEEECHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
DDIAMLKDGDRIADTKSALVLEDLIGQFLYSMGSKD
CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]