Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776186

Identifier: 119776186

GI number: 119776186

Start: 3630465

End: 3630734

Strand: Reverse

Name: 119776186

Synonym: Sama_3054

Alternate gene names: NA

Gene position: 3630734-3630465 (Counterclockwise)

Preceding gene: 119776187

Following gene: 119776185

Centisome position: 84.32

GC content: 50.0

Gene sequence:

>270_bases
ATGTTTAATCGCACACTGACCGCCCTGGCCCTGATGGTTACTCTGGGAATGGCAAACAACGCTCAAGCTACTGAATTTTC
AACTACTGATGTACTGCGCTCTGTCGAAATGAGCGTGATGAGCCAAACCAAGGAAATGCTGCAAAACGCCGCTTTGGACC
TGGAGTTGGAGCTTAAAGCTGAGCTGACCAAGACCTGGGGAACTCTGACTGAAACCGCATCGGCCAAAGATGAGGAACAG
AAAAAAGCGCTGGTAGCCGTCAAGGAGTAA

Upstream 100 bases:

>100_bases
AAAAAATTCCTTTTAAAACATTGCCATAAAAATATTATTAAACTTGGCACGACACTTGTAATACCTGATGTGACATAGGT
TAACAACAGGAGTGAACACC

Downstream 100 bases:

>100_bases
GACATGTGGTTAACACTGGGACTCTCGATGAAAACCGCATTGGTATTGATGTTACCCGTAGCAAGCTTTCTGGCCTGTAC
CCTGGTGACCTACCTGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MFNRTLTALALMVTLGMANNAQATEFSTTDVLRSVEMSVMSQTKEMLQNAALDLELELKAELTKTWGTLTETASAKDEEQ
KKALVAVKE

Sequences:

>Translated_89_residues
MFNRTLTALALMVTLGMANNAQATEFSTTDVLRSVEMSVMSQTKEMLQNAALDLELELKAELTKTWGTLTETASAKDEEQ
KKALVAVKE
>Mature_89_residues
MFNRTLTALALMVTLGMANNAQATEFSTTDVLRSVEMSVMSQTKEMLQNAALDLELELKAELTKTWGTLTETASAKDEEQ
KKALVAVKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9782; Mature: 9782

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRTLTALALMVTLGMANNAQATEFSTTDVLRSVEMSVMSQTKEMLQNAALDLELELKA
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
ELTKTWGTLTETASAKDEEQKKALVAVKE
HHHHHHHHHHHCCCCCCHHHHHHEEEECC
>Mature Secondary Structure
MFNRTLTALALMVTLGMANNAQATEFSTTDVLRSVEMSVMSQTKEMLQNAALDLELELKA
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
ELTKTWGTLTETASAKDEEQKKALVAVKE
HHHHHHHHHHHCCCCCCHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA