Click here to switch to the map view.

The map label for this gene is prkB [H]

Identifier: 119776134

GI number: 119776134

Start: 3574880

End: 3575767

Strand: Direct

Name: prkB [H]

Synonym: Sama_3002

Alternate gene names: 119776134

Gene position: 3574880-3575767 (Clockwise)

Preceding gene: 119776133

Following gene: 119776136

Centisome position: 83.02

GC content: 53.72

Gene sequence:

>888_bases
ATGTCTGCCAAGTATCCCATCATTGCTGTTACCGGGTCATCCGGCGCCGGGACCACGACGACAACCACGGCGTTTAACCA
TATCTTCCGCCAACTTGATATCAATGCGGCCTATGTGGAAGGCGACAGCTTTCACCGCTACACCCGGGCAGAAATGGAAG
TGATGATCCGCAAGGCCAAGGCCGAGAATCGTGACATCAGTTATTTTGGCCCCGAGGCCAATGATTTTGGCCGCCTGGAA
AAGTGTTTTGCCGATTACAGTGCCACCGGCCAGGGTGAGACCCGCAGTTACCTGCACACCTTCGATGAAGCCGTGCCCTT
TAACCAAATGCCCGGCACCTTCACCCAGTGGCGTCCATTGCCCGCCGACACCGACATGCTGTTTTATGAAGGCCTGCACG
GTGGTGTGGTAACCAACGAGCACAATGTAGCCGAGCACGTTGACCTGCTGATTGGCATGGTGCCCATTGTCAACCTGGAG
TGGATCCAAAAAATCATTCGCGACACCTCAGAGCGAGGCCACAGCCGCGAGAAAGTGATGAACTCCATCGTGCGTTCCAT
GGATGATTACATCAACCATATGACGCCACAGTTTTCCCGCACCCACATCAACTTTCAGCGGGTACCCACGGTGGATACCT
CCAACCCCTTTTCGGCCAAAGCCATTCCGAGCCTCGACGAAAGTTTTGTGGTGATCCGTTTTCGCGGCATTAACAATGTG
GACTTTCCGTATTACCTGTCGATGTTGCAGGGCAGCTTTATGTCGCGTATGAACACCATGGTGGTTCCCGGCGGCAAGAT
GTCGCTGGCCATGGAACTTATCCTGACACCGCTTATCAAGGCGCTGAAAGAAAAGCGCGAAGCCCTGCATAACGGTGATA
ATTGTTAA

Upstream 100 bases:

>100_bases
CCCAAGACTGACAGCCGACTATTGACCCGAAGCAGTCCGAGCCCGTATAACTAACGGGCCCGCATTTTTATCAAAATTTT
TTAACATTTCAGGAAGTGCC

Downstream 100 bases:

>100_bases
CCGGCAGCATGAACGTAAAAATTTTACTTTTAACCGTGATTTCAGTTTCTATTAAGTGACACCAATTATTCTGTGTCTCG
TCGGAATTTCAGGCGAAATA

Product: phosphoribulokinase

Products: NA

Alternate protein names: PRK; PRKase; Phosphopentokinase [H]

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSAKYPIIAVTGSSGAGTTTTTTAFNHIFRQLDINAAYVEGDSFHRYTRAEMEVMIRKAKAENRDISYFGPEANDFGRLE
KCFADYSATGQGETRSYLHTFDEAVPFNQMPGTFTQWRPLPADTDMLFYEGLHGGVVTNEHNVAEHVDLLIGMVPIVNLE
WIQKIIRDTSERGHSREKVMNSIVRSMDDYINHMTPQFSRTHINFQRVPTVDTSNPFSAKAIPSLDESFVVIRFRGINNV
DFPYYLSMLQGSFMSRMNTMVVPGGKMSLAMELILTPLIKALKEKREALHNGDNC

Sequences:

>Translated_295_residues
MSAKYPIIAVTGSSGAGTTTTTTAFNHIFRQLDINAAYVEGDSFHRYTRAEMEVMIRKAKAENRDISYFGPEANDFGRLE
KCFADYSATGQGETRSYLHTFDEAVPFNQMPGTFTQWRPLPADTDMLFYEGLHGGVVTNEHNVAEHVDLLIGMVPIVNLE
WIQKIIRDTSERGHSREKVMNSIVRSMDDYINHMTPQFSRTHINFQRVPTVDTSNPFSAKAIPSLDESFVVIRFRGINNV
DFPYYLSMLQGSFMSRMNTMVVPGGKMSLAMELILTPLIKALKEKREALHNGDNC
>Mature_294_residues
SAKYPIIAVTGSSGAGTTTTTTAFNHIFRQLDINAAYVEGDSFHRYTRAEMEVMIRKAKAENRDISYFGPEANDFGRLEK
CFADYSATGQGETRSYLHTFDEAVPFNQMPGTFTQWRPLPADTDMLFYEGLHGGVVTNEHNVAEHVDLLIGMVPIVNLEW
IQKIIRDTSERGHSREKVMNSIVRSMDDYINHMTPQFSRTHINFQRVPTVDTSNPFSAKAIPSLDESFVVIRFRGINNVD
FPYYLSMLQGSFMSRMNTMVVPGGKMSLAMELILTPLIKALKEKREALHNGDNC

Specific function: Unknown

COG id: COG3954

COG function: function code C; Phosphoribulokinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphoribulokinase family [H]

Homologues:

Organism=Escherichia coli, GI2367214, Length=287, Percent_Identity=72.8222996515679, Blast_Score=458, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006082
- InterPro:   IPR006083 [H]

Pfam domain/function: PF00485 PRK [H]

EC number: =2.7.1.19 [H]

Molecular weight: Translated: 33323; Mature: 33192

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00567 PHOSPHORIBULOKINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAKYPIIAVTGSSGAGTTTTTTAFNHIFRQLDINAAYVEGDSFHRYTRAEMEVMIRKAK
CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
AENRDISYFGPEANDFGRLEKCFADYSATGQGETRSYLHTFDEAVPFNQMPGTFTQWRPL
CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
PADTDMLFYEGLHGGVVTNEHNVAEHVDLLIGMVPIVNLEWIQKIIRDTSERGHSREKVM
CCCCCHHEECCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
NSIVRSMDDYINHMTPQFSRTHINFQRVPTVDTSNPFSAKAIPSLDESFVVIRFRGINNV
HHHHHHHHHHHHHCCCCCHHCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
DFPYYLSMLQGSFMSRMNTMVVPGGKMSLAMELILTPLIKALKEKREALHNGDNC
CHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAKYPIIAVTGSSGAGTTTTTTAFNHIFRQLDINAAYVEGDSFHRYTRAEMEVMIRKAK
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
AENRDISYFGPEANDFGRLEKCFADYSATGQGETRSYLHTFDEAVPFNQMPGTFTQWRPL
CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
PADTDMLFYEGLHGGVVTNEHNVAEHVDLLIGMVPIVNLEWIQKIIRDTSERGHSREKVM
CCCCCHHEECCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
NSIVRSMDDYINHMTPQFSRTHINFQRVPTVDTSNPFSAKAIPSLDESFVVIRFRGINNV
HHHHHHHHHHHHHCCCCCHHCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
DFPYYLSMLQGSFMSRMNTMVVPGGKMSLAMELILTPLIKALKEKREALHNGDNC
CHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1756168; 7940673; 7984428; 7920643 [H]