Click here to switch to the map view.

The map label for this gene is uidR [C]

Identifier: 119775988

GI number: 119775988

Start: 3394977

End: 3395561

Strand: Direct

Name: uidR [C]

Synonym: Sama_2856

Alternate gene names: 119775988

Gene position: 3394977-3395561 (Clockwise)

Preceding gene: 119775987

Following gene: 119775999

Centisome position: 78.84

GC content: 53.68

Gene sequence:

>585_bases
ATGGCGATTTTACAAAAGGGCACAGACAAGCGTGGCCAGATTTTGTCGGCGGCGCTGCATCTTTTCAATGGTCAGGGATT
TCACGGCACCTCCACCGCCAGTATTGCCAAGGCGGCAGGGGTAGCCACAGGTACCCTGTTTCATCACTTTCCCAGCAAAG
AAGCCCTGCTGGAGACCCTGTTTTTAACGGTAAAGCAGGAGTTTGCCGACAGCCTTGCGGCCATGGCAATTTTGGAAGGC
TCTCTCGAAGACAGGGCCAGGCAACTTTGGTTTGGCGCCATCGACTGGGCGCTTGAAAACCCTGATAAACAGCAGTTTTT
TCAGCAATTTTCCATGTCGGTGGAAATCCCTTTATCGCTTCGTGAGCAAGCCATGCAGGGTATCCTCGGCTTTATCGGCG
TGATGATAGCCGAGGGGCAGCAGTCAGGAGTGCTTTCGCGGTTACCGCTGCCACTGATGCTGGAAAATTGCCATGGCCAG
TATCTGGCCGCGACCCGCTTTTTTTTGGATCATCCCGAACTGGGTAATGACGCGGAACACAAAGAAGCGAGTTTTCGCCT
CTTCTGGCACGCTATGGCGCTGTAG

Upstream 100 bases:

>100_bases
ACGTGGCCGCCTCAATACCGGCAAGCTGGTGCATCCGCCCTATGGCAATGCCATTCAAACACTGTTGATGAAAGTGTTTT
TGCGTTAAGGGCCAAAGCGG

Downstream 100 bases:

>100_bases
TTCGCAGCCACTTGATAGCGTCGACAGTGCCAACTCTCGAAGGTACTGATGTATGCGTTAAATGAAAAAGCCGCTAAGTC
AGCGGCTTTTTCTTTGGCAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Transcriptional Regulator Tetr Family; Regulatory Protein TetR; Regulatory Protein; TetR Family Transcriptional Regulator Member; Transcriptional Regulator TetR

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAILQKGTDKRGQILSAALHLFNGQGFHGTSTASIAKAAGVATGTLFHHFPSKEALLETLFLTVKQEFADSLAAMAILEG
SLEDRARQLWFGAIDWALENPDKQQFFQQFSMSVEIPLSLREQAMQGILGFIGVMIAEGQQSGVLSRLPLPLMLENCHGQ
YLAATRFFLDHPELGNDAEHKEASFRLFWHAMAL

Sequences:

>Translated_194_residues
MAILQKGTDKRGQILSAALHLFNGQGFHGTSTASIAKAAGVATGTLFHHFPSKEALLETLFLTVKQEFADSLAAMAILEG
SLEDRARQLWFGAIDWALENPDKQQFFQQFSMSVEIPLSLREQAMQGILGFIGVMIAEGQQSGVLSRLPLPLMLENCHGQ
YLAATRFFLDHPELGNDAEHKEASFRLFWHAMAL
>Mature_193_residues
AILQKGTDKRGQILSAALHLFNGQGFHGTSTASIAKAAGVATGTLFHHFPSKEALLETLFLTVKQEFADSLAAMAILEGS
LEDRARQLWFGAIDWALENPDKQQFFQQFSMSVEIPLSLREQAMQGILGFIGVMIAEGQQSGVLSRLPLPLMLENCHGQY
LAATRFFLDHPELGNDAEHKEASFRLFWHAMAL

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21416; Mature: 21285

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILQKGTDKRGQILSAALHLFNGQGFHGTSTASIAKAAGVATGTLFHHFPSKEALLETL
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FLTVKQEFADSLAAMAILEGSLEDRARQLWFGAIDWALENPDKQQFFQQFSMSVEIPLSL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEECCHHH
REQAMQGILGFIGVMIAEGQQSGVLSRLPLPLMLENCHGQYLAATRFFLDHPELGNDAEH
HHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCH
KEASFRLFWHAMAL
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AILQKGTDKRGQILSAALHLFNGQGFHGTSTASIAKAAGVATGTLFHHFPSKEALLETL
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FLTVKQEFADSLAAMAILEGSLEDRARQLWFGAIDWALENPDKQQFFQQFSMSVEIPLSL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEECCHHH
REQAMQGILGFIGVMIAEGQQSGVLSRLPLPLMLENCHGQYLAATRFFLDHPELGNDAEH
HHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCH
KEASFRLFWHAMAL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA